Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3404g00019 ATGGGAATAGCAACACCGCCACCACTTCCATCCATATTTCTTTCACACAGCTCCAGTAAGCTTGATTCTTCCAATTCTATGTCCCAAGATTATCAACAAGGAATCTTCAGTTTCTCGAATGGGTTCGAGAGATCAGCGGTAACACCGCAGCAGCAGCAGATCCGAAGGGAGAAGGTGAGGTTGCAACAAGGGTTCGAGGGAGCACCACCATTAGTTGGGATAGAAGAAGAGGAAGGTGGAGAGCTTCCGGTTTATGAAACCGCAGGGATGTTGTCAGAGATGTTTAATTTCCCTCCGGCCGGCGCCACCGCCGCTGAATTGTTGGAACAGCAGTCTGTGTCGACGGCGACGTATCGGTCCCCGAGGCCACAAGGAGTGGCCAGCAGCAGCAGCGAGTGGTACGGAAACAGACAAGGGATGATAACAACTGGGTTGGGACCGTTGGGAGATTCAAAGAATCAGAACAGTGTGAATAGCCGTGACAGTAATTTGGTTCATCATCATCATCACCATCACAACCAGATTTCAAGCATTAATGCAGACTCAGCAGCTGCCATGCAGCTTTTTCTCATGAACCCTCCTCAAACAAGATCTCCTTCCCCTTCTCCTCCAACTTCTTCCACACTCCATATGTTACTTCCACACCCTTCTTCTAATTCTTTACAAGGTTTCACTGGTTCAGGACCACCAAGTGGTACTTTTGGCCAATTTACATGGGTTCATGACAGTGCTCATCCAGAAGGAGGAACCACTGGCCCTCCTCACCTTAACAACAACAACCAAGGTGAGATTGGTGGCGTTGTGGAAAGCCAAGGTCTTTCGTTATCATTGTCCTCTTCGTTGCAACACTTGGAAGCTGCAAAAGCTGAGGAATTGAGGATGGGGGATAGTGGTTTTATATATTACAATCAAGGAGGTGGAATTGGAGGTGGAGGTGGAGCCGGTCCATCTTCCTCAGCTCAGTTTCCGTACAAGAATAATAATCTTCAGGCATTGCATTTACAAGGTGGTGGTTCCATAGGAGGACACAATAATAACAACCAGGGTTTCGGGTCATCCTTAGGTATTGTAAATGTTCTGAGAAATTCAAAGTATGTGAAGGCTGCTCAAGAATTGCTCGAAGAGTTTTGCAGTGTTGGGAGGGGTCAGTTTAAGAAGAGCAAGTTCAATAGGCAGAATTCAAACCCTAATTCAAATCCCGGTGGCGGCGGCGCTTCTTCTTCTTCATCAAAAGATCCTCCTCCTCCTCCTCCTTTGTCAGCGGCTGATAGAATTGAGCATCAGAGAAGGAAGGTCAAACTTCTATCAATGCTTGACGAGGTGGACAGGAGATACAACCACTACTGCGAACAAATGCAAATGGTAGTGAACTCATTTGACCTGGTAATGGGTTTTGGTGCAGCAGTTCCATACACAGCACTTGCGCAGAAAGCAATGTCTCGGCATTTCCGGTGTCTGAAGGATGCGATATCAGCGCAGCTGAAGCACAGTTGTGAGCTTCTGGGAGAGAAAGATGGGGCAGGGTCTTCAGGTTTGACCAAGGGAGAGACCCCAAGGCTAAAGATGTTAGAGCAAAGCCTAAGACAACAAAGAGCCTTCCATCAAATGGGGATGATGGAACAAGAAGCTTGGAGACCCCAGAGAGGCTTGCCTGAACGATCTGTCAACATTTTAAGAGCTTGGCTTTTCGAGCATTTTCTCCACCCGTATCCAAGCGATGCAGATAAGCATCTTTTGGCACGACAGACTGGGCTATCGAGAAATCAGGTATCAAACTGGTTCATTAATGCCAGGGTTCGGTTGTGGAAACCCATGGTGGAAGAGATGTACCAACAAGAACTTAAAGAAGCAGAGTGTGCAGAAGAGAGAGAAAGGAACCAAAGCAATAGCAATAGTGCCCACGTAGCACAAACTCCAACCACACCAACAACAGCTACAACATCAACAGCAACAGCGCCACCACCACCAACAACAACAACAAAACCAACAGGCAAAAGATCCGATATCAATGCTACTGAAAGCGACCCTTCACTCGTTGCAATCAATAGACAAGGCTTCTCGGAAAACCAAGCAGCCCATTCTAGCTCCAACACCACCACCACCACCACCACCAACACGGTCGTCAACGCCCCCGCCTCTGAGGTGGCGCCACCCGGGTCTCAGTGCTTCGATTCAGACCTGCCCCTACACAGATCAATAGCCATTGATGACACGTGTCGCCATGGCAGCTTGGTGACAGCAGATTATGGGACCGCATCTGCAAGTGCTGACATTGGATCCACTCTCATTAGATTTGGGACCACCGCCGGTGACGTGTCACTCACCTTAGGGCTACGCCACGCCGGAAACATGCCGGATAAATCTCCTTTCTCTGTTAGGGACTTTGGAGGCATTTAA 2397 0.4848 MGIATPPPLPSIFLSHSSSKLDSSNSMSQDYQQGIFSFSNGFERSAVTPQQQQIRREKVRLQQGFEGAPPLVGIEEEEGGELPVYETAGMLSEMFNFPPAGATAAELLEQQSVSTATYRSPRPQGVASSSSEWYGNRQGMITTGLGPLGDSKNQNSVNSRDSNLVHHHHHHHNQISSINADSAAAMQLFLMNPPQTRSPSPSPPTSSTLHMLLPHPSSNSLQGFTGSGPPSGTFGQFTWVHDSAHPEGGTTGPPHLNNNNQGEIGGVVESQGLSLSLSSSLQHLEAAKAEELRMGDSGFIYYNQGGGIGGGGGAGPSSSAQFPYKNNNLQALHLQGGGSIGGHNNNNQGFGSSLGIVNVLRNSKYVKAAQELLEEFCSVGRGQFKKSKFNRQNSNPNSNPGGGGASSSSSKDPPPPPPLSAADRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAISAQLKHSCELLGEKDGAGSSGLTKGETPRLKMLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQELKEAECAEERERNQSNSNSAHVAQTPTTPTTATTSTATAPPPPTTTTKPTGKRSDINATESDPSLVAINRQGFSENQAAHSSSNTTTTTTTNTVVNAPASEVAPPGSQCFDSDLPLHRSIAIDDTCRHGSLVTADYGTASASADIGSTLIRFGTTAGDVSLTLGLRHAGNMPDKSPFSVRDFGGI 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3404g00019 798 ProSiteProfiles 'Homeobox' domain profile. 541 604 IPR001356 GO:0003677
Gabi3404g00019 798 FunFam BEL1-like homeodomain protein 4 547 609 - -
Gabi3404g00019 798 MobiDBLite consensus disorder prediction 617 671 - -
Gabi3404g00019 798 SMART HOX_1 544 608 IPR001356 GO:0003677
Gabi3404g00019 798 MobiDBLite consensus disorder prediction 629 654 - -
Gabi3404g00019 798 SMART prehox3 354 492 IPR006563 -
Gabi3404g00019 798 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 204 630 - -
Gabi3404g00019 798 MobiDBLite consensus disorder prediction 387 424 - -
Gabi3404g00019 798 Gene3D - 547 609 - -
Gabi3404g00019 798 Pfam Homeobox KN domain 561 600 IPR008422 GO:0003677|GO:0006355
Gabi3404g00019 798 CDD homeodomain 544 605 IPR001356 GO:0003677
Gabi3404g00019 798 Pfam Associated with HOX 359 491 IPR006563 -
Gabi3404g00019 798 MobiDBLite consensus disorder prediction 387 409 - -
Gabi3404g00019 798 SUPERFAMILY Homeodomain-like 546 611 IPR009057 -
Gabi3404g00019 798 Coils Coil 607 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3404g00019 Gabi-Chr3404 155527 162741 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3404g00019 1 591 Homeobox Transcription Factor Family AT4G36870 51.800 6.34e-150 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gabi3404g00019 POX 3.9e-52 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3404g00019 - - jre:108995343 935.25