Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3404g00018 ATGGAAGTACTACCTTGTTCTGGTGTTCAATATGCTGGGGAATCTGATTGCCCTCAGCAGAGTTCAGGAACTGCTTTTGTATACCAGGGAGAACTGAATTGCCCAGAAAATGGTGAACAAGTTAAATTGTCAGATGGTCAAATGAATGAATCATCACTTAAGATACAAAGGCAAGGTGAAGGGAACCATACTGTTTGTGATTTGTCGACTAATTCAGATTGCCAATGCATTGGAGCTTCATGTTGTGACTGTGGAGTGGAAGACCAAAAGGAATACTGTGATTTCCATGATTTTGAAGATAATGTGGATACGATTGAAAGTGAATCACCAAACAACAGTAGGGAAGGAGACTTGTCTTTTTCTGAACCCACGTGGCTAGAGGGGGATGAATCTGTGGCACTGTGGGTCAAGTGGAGAGGGAAGTGGCAGGTTGGCATCCGATGTTCAAGGGCTGACTGGCCGTTATCAACTTTGAAAGCAAAACCAACTCATGACCGAAAAAAATATTTTGTCATATTTTTTCCACACACAAAGAATTATTCTTGGGCGGATATGCTGCTTGTTAGATCAATCAATGAGTTTCCCCATCCTATTGCATATGAGACTCATCAGGTAGGATTGGAAATGGTAAAAGACTTAAATGTTGCACGGCGGTTTATAATGCAAAAGCTGGCTGTTGGCATGCTGGACATCATCGATCAGTTTCATTTTAATGCTTTGACAGAAACTGCCCGTGATGTGAAGGTTTGGATGGGATTCGCTATGGAGGCTTCTCGTTGTAATGGTTATTCTGATTTTGGAAGAATGCTTCTAAAGCTGCATAATAGCATACTGCAGCGATACTTAAATGCTGACTGGTTACAGCATTCTTCTCACTCTTGGGTTGAACGATGTGAGAGTGCAAATAGTGCCGAATCAGTAGAGCTGCTGAAGGAGGAATTGTTTGATTCTATTTTGTGGAATGATGTCAACACTCTCTGGGATGCACCAGCACAACCAACATTAGGTTCTGATTGGAAAACCTGGAAGCATGATGTAATGAAATGGTTTTCAACATCACCTTTATTATGTGGCAGCAAAGACACACAGCGACAGACTTGTGATGATTCGTACCAAGCAAACCTTCAGGTTTGTAGAAAAAGGCCCAAACTTGAAGTTCGTCGTGCAGATACACATGCTTCACAAGTGGAAATCAAGGGTTCAGATCACTCTATTGCTCTTGAGACAGACCCTGGCTTCTTTAAGAATCAGGACACATTGAGCACATTAGCAGCTGAGACTTGTAAACAGGAAGATGTTAGGGAGGTATCTATAGAAATGGATTCGCCTAGTAATTTTGCCAATAAATGGAATGAAATTGTAGTTGAGGCTGCCGATTCTGATTTCTTGCATGCTAAAGTAATGGAATCAACACCTATGAATGAAATGGATGTTGCAAAATCGGTAGAACCTGGTTGTAAGAATAGACAATGTATAGCTTATATTGAAGCTAAGGGAAGACAGTGTGTGAGATGGGCAAATGATGGTGATGTATACTGTTGTGTGCATTTGTCCTCCCGTTTTTTGGGCAGCTCAACAAAAGGTGAAAAGCCTGTACCAGTTGATACTCCTATGTGTGAAGGTACAACTGTTCTGGGTACTAGATGTAAGCATCGGTCCCTACCTGGCTCTTCCTTCTGTAAGAAACACCGGCCCCATGCTGAAGCAGAACAGATCTCAAATTTACCCCCGAATACACTAAAGAGGAAACATGAAGAAAATTGTACTGGTTCAGAGGACACATTCTGCAAAGACATGGTATTGGTAGATGTTGAAAGCCCACTGCAAGTGGATCCAATGTCATCCATTGATGGTGATTCCTTACATGGAAAAAGCAACTTGAACGAGAAGCCCATGCATTCTGAAAATGATCATAATGCCATGGAGGCACTGCGCTGTATAGGTTCTCCTCCCTATGATAACAAGAATCCTTGTAGGGAAGCTCCTAAACGGTATTGCTTGTACTGTGAAAGGCACCTTCCAAGCTGGCTTAAACGTGCAAGAAATGGGAAGAGTAGAATAGTATCGAAAGAAGGGTTCACAGAACTTTTGAAGGACTGCAGCTCATGGGAGCAAAAGGTACATCTGCATAAGGCATGTGAGCTTTTTTACAGACTATTTAAAAGCATTTTATCACTAAGAAACCCTGTTCCTAAGGATGTCCAATTCCAGTGGGCTTTGGCTGAAGCCTCTAAAGATACTAGTGTAGGAGAATATTTTACGAAGTTGGTCCATAGCGAAAAAGCGAGAATTAAATTGATGTGGGGATTCAATGATGACATGGATGTATCCTCTGTCATGGAAGGACCACCTCTCTTGCCATCCACAATTAATGATATCTGTGATAATGAAAATGCCATTAAGTGTAAGATATGCTCCGCAGAGTTTCCTGATGACCAAGCACTTGGAAACCATTGGATGGACAGTCATAAAAAGGAAGCACAGTGGCTGTTTAGAGGTTGTGCATGTGCCATTTGTCTGGATTCTTTTACTAACAAGAAATTGTTGGAAACCCATGTTCAAGAGAGACACCATGTGCAATTTGTAGAACAATGCATGCTTCTTCAATGCATTCCTTGTGGGAGTCATTTTGGAAATACTGAGCAATTATGGCAGCATGTTTTATCTGTTCATCCCGTTGATTTTAAGCCATCAAAAGTGCTTGAGCAGCCAACTTTCTCTACTGGTGAAGATTCTCCAGTGAAACATGATCAGGGAAATTCAGCCCCTTTGGAGAATAACTCTGAGAATCCAAGTTGTTTACGGAAGTTTGTTTGCAGGTTTTGTGGGTTGAAATTTGATTTACTACCTGACCTAGGTAGACATCACCAAGCTGCTCATATGGGGCCCAATCTAGTTAGAGGCCGCCCTGCAAAGAAGGGAGTTCGCCATTATGCATATAGATTAAAATCTGGCAGACTTAGCCGCCCTAGATTTAAAAAAGGTTTGGCAACAGCATCATACAGGATTAGAAATAGGGCTAATGCTAATTTGAAGCGATGCATTCAGTCAACAAAGTCACTTGGCATGGGGGGAATGACCATACAACCTCATGTAACTGAAACAACAGATATCGGTAGATTGGCAGAACATCAATGCTCAGCTGTTGCTAAGATTTTGTTTTCAGAGATTCAGAAGACTAAACCTCGGCCTAATAATCTTGATATTTTATCAATTGCTCGTTCTGCTTGCTGCAAAGTTAGTCTTGTGGCCTCACTGGAGGAGAAATATGGAGTTCTTCCTAAAAAGCTCTATTTGAAGGCAGCAAAACTTTGCAGCGAGCATAATATTGTAGTGAATTGGCACCAGGAAGGGTTTATTTGTCCTAGAGGTTGTAATATATTGAAGGATCAAGTCCTGCTCTCTCCTTTGGCATCTTTTACTAATGGTTACGTAAGGACAAAATCTGTAAATTTATCTGATTCTGCAAGTGATGAGTGGGAGGTTGATGAGTTTCACTGTATCATCAATTCACGTAGTTTAAAATTAGGTTCTGTGCAAAAGGCAATAATCTTGTGTGATGACATTAGCTTTGGGAAGGAATCAGTTCCAGTGATTTGTGTAGTAGATCAAGAACTTCTGCATTCTCTTCATATGCATGGGTCCAGTGAACAAGATATAAACTCTTCTAAGCCTTGGGAGAGCTTTACCTATGTTACGAAGTCATTGCTTGATCAATCCCTTTGTCTTGATTCAGAGAGTCTGCAATTGGGATGTGCCTGCTCATATTCAACATGCTGTCCTGAAACATGTGATCATGTATACCTTTTTGGTAATGACTATGATGATGCAAAAGACATTTTTGGGAAACCAATGCGGGGTAGGTTTCCATATGACGAGAATGGTCGAATAATATTGGAGGAAGGTTACCTTGTCTATGAGTGCAATCGTATGTGCAGATGCAATAAATCCTGTCCAAACAGAATACTGCAGAAGGGAGTACGAGTCAAATTGGAAGTCTTTAAAACAGAGAAAAAGGGATGGGCGGTCAGGGCTGGTGAAGCAATTCTTCGGGGCACATTTGTGTGCGAGTACATTGGAGAGGTTTTAGATTTGCACGAGGCACACAACAGGCGCACGAGATATGGCACAAAGAATTGCAGTTATTTCTATGACATCGATGCTCGTGTTAATGATATGAGCAGATTGGTTGAAGGACAGGCCCAATATGTAATTGATGCGACTAAATATGGAAATGTTTCAAGGTTCATCAATCATAGCTGCTCGCCCAATCTTGTTAATCACCAAGTTCTTGTAGAGAGCATGGATTGTGAGCGTGCACATATTGGTCTTTATGCAAGTCGAGATATTGCTTTGGGTGAAGAGCTGACATATGACTATCAATATAAGCTTGTGCCTGGAGAAGGATCTCCATGTCTTTGTGGATCGTTGAAGTGTAGGGGACGCCTTTACTAG 4455 0.4144 MEVLPCSGVQYAGESDCPQQSSGTAFVYQGELNCPENGEQVKLSDGQMNESSLKIQRQGEGNHTVCDLSTNSDCQCIGASCCDCGVEDQKEYCDFHDFEDNVDTIESESPNNSREGDLSFSEPTWLEGDESVALWVKWRGKWQVGIRCSRADWPLSTLKAKPTHDRKKYFVIFFPHTKNYSWADMLLVRSINEFPHPIAYETHQVGLEMVKDLNVARRFIMQKLAVGMLDIIDQFHFNALTETARDVKVWMGFAMEASRCNGYSDFGRMLLKLHNSILQRYLNADWLQHSSHSWVERCESANSAESVELLKEELFDSILWNDVNTLWDAPAQPTLGSDWKTWKHDVMKWFSTSPLLCGSKDTQRQTCDDSYQANLQVCRKRPKLEVRRADTHASQVEIKGSDHSIALETDPGFFKNQDTLSTLAAETCKQEDVREVSIEMDSPSNFANKWNEIVVEAADSDFLHAKVMESTPMNEMDVAKSVEPGCKNRQCIAYIEAKGRQCVRWANDGDVYCCVHLSSRFLGSSTKGEKPVPVDTPMCEGTTVLGTRCKHRSLPGSSFCKKHRPHAEAEQISNLPPNTLKRKHEENCTGSEDTFCKDMVLVDVESPLQVDPMSSIDGDSLHGKSNLNEKPMHSENDHNAMEALRCIGSPPYDNKNPCREAPKRYCLYCERHLPSWLKRARNGKSRIVSKEGFTELLKDCSSWEQKVHLHKACELFYRLFKSILSLRNPVPKDVQFQWALAEASKDTSVGEYFTKLVHSEKARIKLMWGFNDDMDVSSVMEGPPLLPSTINDICDNENAIKCKICSAEFPDDQALGNHWMDSHKKEAQWLFRGCACAICLDSFTNKKLLETHVQERHHVQFVEQCMLLQCIPCGSHFGNTEQLWQHVLSVHPVDFKPSKVLEQPTFSTGEDSPVKHDQGNSAPLENNSENPSCLRKFVCRFCGLKFDLLPDLGRHHQAAHMGPNLVRGRPAKKGVRHYAYRLKSGRLSRPRFKKGLATASYRIRNRANANLKRCIQSTKSLGMGGMTIQPHVTETTDIGRLAEHQCSAVAKILFSEIQKTKPRPNNLDILSIARSACCKVSLVASLEEKYGVLPKKLYLKAAKLCSEHNIVVNWHQEGFICPRGCNILKDQVLLSPLASFTNGYVRTKSVNLSDSASDEWEVDEFHCIINSRSLKLGSVQKAIILCDDISFGKESVPVICVVDQELLHSLHMHGSSEQDINSSKPWESFTYVTKSLLDQSLCLDSESLQLGCACSYSTCCPETCDHVYLFGNDYDDAKDIFGKPMRGRFPYDENGRIILEEGYLVYECNRMCRCNKSCPNRILQKGVRVKLEVFKTEKKGWAVRAGEAILRGTFVCEYIGEVLDLHEAHNRRTRYGTKNCSYFYDIDARVNDMSRLVEGQAQYVIDATKYGNVSRFINHSCSPNLVNHQVLVESMDCERAHIGLYASRDIALGEELTYDYQYKLVPGEGSPCLCGSLKCRGRLY 1484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3404g00018 1484 ProSitePatterns Zinc finger C2H2 type domain signature. 939 960 IPR013087 -
Gabi3404g00018 1484 MobiDBLite consensus disorder prediction 904 929 - -
Gabi3404g00018 1484 ProSiteProfiles SET domain profile. 1329 1461 IPR001214 GO:0005515
Gabi3404g00018 1484 ProSiteProfiles Zinc finger C2H2 type domain profile. 937 965 IPR013087 -
Gabi3404g00018 1484 Pfam SET domain 1340 1460 IPR001214 GO:0005515
Gabi3404g00018 1484 Pfam Zinc finger C2H2-type, 3 repeats 836 961 IPR040689 -
Gabi3404g00018 1484 SUPERFAMILY SET domain 1178 1474 IPR046341 -
Gabi3404g00018 1484 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1484 - -
Gabi3404g00018 1484 ProSiteProfiles Pre-SET domain profile. 1250 1326 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi3404g00018 1484 ProSiteProfiles Post-SET domain profile. 1468 1484 IPR003616 -
Gabi3404g00018 1484 SMART preset_2 1186 1313 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi3404g00018 1484 MobiDBLite consensus disorder prediction 611 633 - -
Gabi3404g00018 1484 Gene3D Classic Zinc Finger 800 858 - -
Gabi3404g00018 1484 ProSitePatterns Zinc finger C2H2 type domain signature. 802 823 IPR013087 -
Gabi3404g00018 1484 Gene3D SET domain 1167 1465 IPR046341 -
Gabi3404g00018 1484 Pfam Pre-SET motif 1189 1321 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi3404g00018 1484 SMART c2h2final6 937 960 IPR013087 -
Gabi3404g00018 1484 SMART c2h2final6 868 891 IPR013087 -
Gabi3404g00018 1484 SMART c2h2final6 834 857 IPR013087 -
Gabi3404g00018 1484 SMART c2h2final6 800 823 IPR013087 -
Gabi3404g00018 1484 SMART set_7 1329 1467 IPR001214 GO:0005515
Gabi3404g00018 1484 ProSitePatterns Zinc finger C2H2 type domain signature. 870 891 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3404g00018 Gabi-Chr3404 132255 145942 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3404g00018 94 1483 C2H2 Transcription Factor Family AT2G23740 51.489 0.0 1392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi3404g00018 Pre-SET 1.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3404g00018 - - gmx:100786757 2577.36