Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3404g00008 ATGTTTCTTCATCACCGGACAAATTTCGCTATCGTGCTCACAATCTTCATGGCGTGGACAACAACAAGAGCACAAAACTTCGAAACATGCCAGAGCCGTTGCGGAGGAAAGTCCCTGCAGTACCCTTTAGGCTTCTCTGAAGGTTGTGGAGTTCAACTAAACTGTAACAACAACCAAGTCCAATTAGGTGGTTTTCTGGTCCAGAACGTAACCAGTAACAGTATATTCATCAATCTCCCTGCGAAATGCAACCGTAGCATGCATTCGATGATCCCTCTTTTCGGTGACAACTTTGCTCCCACATGGAACAATAGCTTTCTGGTGCAAGATTGTGCAGCTCCACTTGATGGCTGCGTTATTCCTACCTCCACTTTTATGGGGAGCCAGATTGAGCTTGGAAACTGCGATAGCAGAAGTGGTAATATCAGTTGCTTTTCGCGGCAGCCACGTAATCAAACGTTGGATGTTGTGACATACGATGAATTGAACCGAACTGGTTGCAACTACATGTTCTCAGCAGTTGCTATTGGACAGAGCAAAGATATTTCATTACAGTTTCAGGTGGTTGAGTTGGAATGGTGGCTTCAAGGGCCGTGCCAATGTTCTTCCAACGCTACCTGCACACCGGTTCTTCTCCGAGGACGGAGCTCCGGGTTCCGGTGCCAGTGTGACGATGGTTTCAGGGGAGACGGCTTCACCGGTGGCACTGGTTGCCGGCGAGTTCCAAGTTGCAGTGCTTCAACACTAACGTCTGGGGGATGTGGGAAAGCAACCGAAATCGGTGTTATTGTTGGAGTGATCGTAACTGGAGCTTTGGTCGTGGCTGCTTTGTTTCTTCTATGCTACTGTGTGAGGCGCCGTTCTACTTGGTTGAGAAAACATACGAGAGTAAAGCGCCTATTACGTGAAGCTGCAGGCAACTCTAGTGTACCTTTCTACCCTTACAAAGAAATAGAAAGAGCCACAAATTCTTTCTCTGAGAAGTTGAGGCTGGGAACCGGGGCATTTGGTACAGTTTATTCTGGAAAACTTCACAATGATGAATGGGTTGCTATAAAGAAGTTAAGGTATAGAGACAACAGTGTTGACCAGGTAATGAATGAGATCAAGCTCCTTTCTTCGGTGAGTCACCAAAATTTAGTTCGCCTCCTAGGTTGCTGCATAGAGGAGGGAGAGCAGATCCTTGTTTATGAATATATGCCAAATGGAACGCTATCTCAGCATTTGCAAAGAGAGAGGGGTAAAGGTCTACCATGGACTATAAGACTTACCATTGCTACTGAAACTGCTAATGCCATAGCATATCTCCACTCTGCAATTAATCCCCCAATTTACCATAGAGACATAAAATCCAGTAATATACTATTGGATTATAGCTTCAAATCCAAAGTAGCTGATTTTGGTCTTTCTAGGCTTGGCATGACCGAAACATCACATATCTCAACAGCCCCACAAGGGACTCCGGGTTATGTTGATCCCCAATACCACCAGAACTTCCATCTTTCTGATAAAAGTGATGTCTACAGTTTTGGAGTGGTTTTGGTAGAGATAATAACTGCCCAGAAAGTGGTTGATTTTTCTCGACCTCAGAGTGAGGTTAATTTAGCTGCACTTGCTGTTGATAGGATTAGGAGGGGTTCTGTAGATGAGATCATAGATCCCTTCCTTGAACCAAATAGAGATGCTTGGACTCTATATTCTATTCATAAGTTGGCTGAGCTTGCATTTAGATGCCTTGCTTTTCATAGTGACATGAGGCCTACTATGATGGAAGTGGCAGAAGAGCTAGAACACATCAGGCGCAGTGGATGGGCAACTATGGAGGAAACTTTAATGGCTTCTCCAGTTGGATCTGCAAGTTCATCGCCTCGCAACGGAAGTGAGAAGTCACTGAGTGGTATCAAGGTTAAGAGAGCAGGGCAAGGGAGTGAGAGATTGATAGTTCCAGATAAGGCCGAGATCTTTTTGGATTCTATGGAGGTCAAGGATAGCTCTCCTGTATCAGTGCAGGATCCTTGGTTAAGTGGACATAGCTCACCTTCAACAAGCAGCTTGTTGGGAAATGTCGTTCGGTGA 2076 0.4528 MFLHHRTNFAIVLTIFMAWTTTRAQNFETCQSRCGGKSLQYPLGFSEGCGVQLNCNNNQVQLGGFLVQNVTSNSIFINLPAKCNRSMHSMIPLFGDNFAPTWNNSFLVQDCAAPLDGCVIPTSTFMGSQIELGNCDSRSGNISCFSRQPRNQTLDVVTYDELNRTGCNYMFSAVAIGQSKDISLQFQVVELEWWLQGPCQCSSNATCTPVLLRGRSSGFRCQCDDGFRGDGFTGGTGCRRVPSCSASTLTSGGCGKATEIGVIVGVIVTGALVVAALFLLCYCVRRRSTWLRKHTRVKRLLREAAGNSSVPFYPYKEIERATNSFSEKLRLGTGAFGTVYSGKLHNDEWVAIKKLRYRDNSVDQVMNEIKLLSSVSHQNLVRLLGCCIEEGEQILVYEYMPNGTLSQHLQRERGKGLPWTIRLTIATETANAIAYLHSAINPPIYHRDIKSSNILLDYSFKSKVADFGLSRLGMTETSHISTAPQGTPGYVDPQYHQNFHLSDKSDVYSFGVVLVEIITAQKVVDFSRPQSEVNLAALAVDRIRRGSVDEIIDPFLEPNRDAWTLYSIHKLAELAFRCLAFHSDMRPTMMEVAEELEHIRRSGWATMEETLMASPVGSASSSPRNGSEKSLSGIKVKRAGQGSERLIVPDKAEIFLDSMEVKDSSPVSVQDPWLSGHSSPSTSSLLGNVVR 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3404g00008 691 MobiDBLite consensus disorder prediction 665 691 - -
Gabi3404g00008 691 MobiDBLite consensus disorder prediction 613 629 - -
Gabi3404g00008 691 MobiDBLite consensus disorder prediction 613 634 - -
Gabi3404g00008 691 Pfam Protein tyrosine and serine/threonine kinase 330 596 IPR001245 GO:0004672|GO:0006468
Gabi3404g00008 691 Gene3D Transferase(Phosphotransferase) domain 1 400 613 - -
Gabi3404g00008 691 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 10 674 IPR044652 GO:0004672
Gabi3404g00008 691 ProSitePatterns Protein kinases ATP-binding region signature. 331 354 IPR017441 GO:0005524
Gabi3404g00008 691 SUPERFAMILY Protein kinase-like (PK-like) 305 597 IPR011009 -
Gabi3404g00008 691 SMART serkin_6 325 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3404g00008 691 Gene3D Phosphorylase Kinase; domain 1 285 399 - -
Gabi3404g00008 691 FunFam Wall-associated receptor kinase-like 20 400 609 - -
Gabi3404g00008 691 FunFam Wall-associated receptor kinase-like 14 292 399 - -
Gabi3404g00008 691 Gene3D Laminin 190 235 - -
Gabi3404g00008 691 ProSiteProfiles Protein kinase domain profile. 325 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3404g00008 691 ProSitePatterns Serine/Threonine protein kinases active-site signature. 444 456 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3404g00008 Gabi-Chr3404 42999 47753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3404g00008 1 691 Receptor kinase-like Gene Family AT2G23450 58.133 0.0 778
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Gabi3404g00008 PK_Tyr_Ser-Thr 7.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3404g00008 - - gmx:100779130 1026.54