Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3402g00001 ATGGAGTTCGATCCAAGCTTGCAAGAGAAATTTCCTTACCTTTCTGGGATTTTCCAGGAAAATCCCTACATAAAATCCGAGATCATACCCAGTACTATTCCATTGCAGCAAACCTCAATTCTTTCTGCACCACCACCACCACCAAACAACACCTTCATGTATGAGAACAATTTCAACCATTTTGAGCACCATCCTCTGAATGGTGCTAACTATCACCACCACAATCACTCTGCTCATGTCATGGAGGTTCCATCCTCCATGAACCCATTCCTGATCCCAACCAGATCTTCTGGTGACCCATACATGGCTCCAAACCGGTTCTACCCAATGGGGTATGCACCAAACATGGAAGGCATGCATGGTTACCTCAACAATGGAAAGGGTCCTTGGGATGTTTCCCAGAAAAATCCCTTTCAGTTTGGTGCAAGTTCACAGACTCATATGAGTCCCTTGATGCCAGCATCACTAGTTTATGATCCATATGGATCAGTGCCAATGAAGCCTAGGCTTCAAGATCAGAATTCATCTTTTGCAGGAACTGGACTTGCTCACTGGAAAACTGATCAGAAACCTTTTATTCCTGAACTGAATCAGAGGAGGGTGCTGATGAAAAAGAGTGCTAGACTTCAACACAAGCTTGCCAACATAATCAAAGGCCAGTGGACTCCACATGAGGACATGGTTCTCATCCAATTAGTGAACCGCTTCGGACTGAAAAAATGGGCCCACATCGCCAAGTTACTGAATGGCAGGGTTGGGAAACAGTGCAGAGAGAGATGGCACAATCATCTCCGCCCCAACATTAGGAAGGAGTCATGGAACGAAGAGGAGGACAAGATTCTCATTGAAGCTCATAAGGAAGTTGGAAACAAGTGGGCAGAGATTGCAAAGAGATTGCCAGGGCGTACTGAGAACACCATCAAGAACCATTGGAACGCAACGAAGCGCCGCCAGTATTCAAAGAAGCAGAAGAAAACTCGCACTAGTTCTAAGGGAACACTGCTTCAGAACTACATCAAGAAAGTCACTGCTGCTGAAGAAGCTGAGAAGGAGTTGAAGAAATCAATGAGCATGATGAACATAAGGGATGAGGAGTGCAGTGAAATGGGTCTCCTTCATGTTCGTTATGAGAGCTCAGAGGGAACCTTTAGCTCTGAAGATTTTGCTTCTCAAATGGGTGGTCACGTGGACGAGGATGGTGAAGATGGCTGGACTCACGTGCCGGTCAATGCTTTTGAAATTGCAAGTGGCTCTGTGGTGGGAGATAGCACAATGGATTATGAGGCTGCAGTGAAGATGGATAACGTGGTGCCTAAAGTTCAGATGAAGAAGGAAATTGATCCCATGGAGGAGGTCTATGGAAAGCCATAA 1371 0.4573 MEFDPSLQEKFPYLSGIFQENPYIKSEIIPSTIPLQQTSILSAPPPPPNNTFMYENNFNHFEHHPLNGANYHHHNHSAHVMEVPSSMNPFLIPTRSSGDPYMAPNRFYPMGYAPNMEGMHGYLNNGKGPWDVSQKNPFQFGASSQTHMSPLMPASLVYDPYGSVPMKPRLQDQNSSFAGTGLAHWKTDQKPFIPELNQRRVLMKKSARLQHKLANIIKGQWTPHEDMVLIQLVNRFGLKKWAHIAKLLNGRVGKQCRERWHNHLRPNIRKESWNEEEDKILIEAHKEVGNKWAEIAKRLPGRTENTIKNHWNATKRRQYSKKQKKTRTSSKGTLLQNYIKKVTAAEEAEKELKKSMSMMNIRDEECSEMGLLHVRYESSEGTFSSEDFASQMGGHVDEDGEDGWTHVPVNAFEIASGSVVGDSTMDYEAAVKMDNVVPKVQMKKEIDPMEEVYGKP 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3402g00001 456 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 265 319 IPR017930 -
Gabi3402g00001 456 Gene3D - 217 269 - -
Gabi3402g00001 456 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 213 264 IPR017930 -
Gabi3402g00001 456 Gene3D - 271 343 - -
Gabi3402g00001 456 Coils Coil 335 355 - -
Gabi3402g00001 456 Pfam Myb-like DNA-binding domain 221 279 - -
Gabi3402g00001 456 SMART sant 269 317 IPR001005 -
Gabi3402g00001 456 SMART sant 217 266 IPR001005 -
Gabi3402g00001 456 SUPERFAMILY Homeodomain-like 215 311 IPR009057 -
Gabi3402g00001 456 PANTHER MYB PROTEIN-RELATED 186 330 - -
Gabi3402g00001 456 ProSiteProfiles Myb-like domain profile. 265 315 IPR001005 -
Gabi3402g00001 456 CDD SANT 221 264 IPR001005 -
Gabi3402g00001 456 FunFam Transcriptional activator Myb isoform A 217 270 - -
Gabi3402g00001 456 CDD SANT 272 315 IPR001005 -
Gabi3402g00001 456 ProSiteProfiles Myb-like domain profile. 213 264 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3402g00001 Gabi-Chr3402 10777 13265 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3402g00001 212 342 MYB Transcription Factor Family AT4G18770 67.939 1.31e-61 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3402g00001 Myb_DNA-bind_6 1.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3402g00001 K09422 - lang:109354158 317.775