Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi33g00012 ATGTTCTTCCACGACAACGAAGAGGTCAAGTTATCATGTCTTCTCGAAACCATGTTCCCACCAGGTGAAGTAGAGGAGCTGTTTACCCTCATTCACGAACCGGAAGACCCGGCCAGCCCAGGTTCCGGTTCACAAGGATCGAACCGGGCGGTTTACTCGACGCACGAGAGAAAGCTAAGGCGAATGAAGTCAAACCGGGAGTCAGCCAGGCGGTCCCGCTGGAGAAAGAAGAGGCATTTAGATAACCTCACGAACCAAGTGAACCGGTTCAGAACAGAAAACCAAGAACTGAAAAACCGGCTATGCTTGACCGTGCACCACCATTTCCTACTATCCGTGGAAAATGAACGTCTACGATCCGAATCCATGACCCTTCGGTCCAAACTTTCGGATCTTTATCGGATTTTAGGCACCATGCTTTCACAATAG 429 0.4988 MFFHDNEEVKLSCLLETMFPPGEVEELFTLIHEPEDPASPGSGSQGSNRAVYSTHERKLRRMKSNRESARRSRWRKKRHLDNLTNQVNRFRTENQELKNRLCLTVHHHFLLSVENERLRSESMTLRSKLSDLYRILGTMLSQ 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi33g00012 142 CDD bZIP_plant_GBF1 58 108 IPR045314 GO:0003700|GO:0006355
Gabi33g00012 142 Gene3D - 55 106 - -
Gabi33g00012 142 MobiDBLite consensus disorder prediction 33 75 - -
Gabi33g00012 142 PANTHER BZIP TRANSCRIPTION FACTOR 44 41 139 - -
Gabi33g00012 142 Coils Coil 80 100 - -
Gabi33g00012 142 SMART brlzneu 53 124 IPR004827 GO:0003700|GO:0006355
Gabi33g00012 142 FunFam BZIP transcription factor 55 106 - -
Gabi33g00012 142 Pfam bZIP transcription factor 57 101 IPR004827 GO:0003700|GO:0006355
Gabi33g00012 142 SUPERFAMILY Leucine zipper domain 57 108 IPR046347 GO:0003700|GO:0006355
Gabi33g00012 142 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 55 101 IPR004827 GO:0003700|GO:0006355
Gabi33g00012 142 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 60 75 IPR004827 GO:0003700|GO:0006355
Gabi33g00012 142 Coils Coil 52 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi33g00012 Gabi-Chr33 131480 131908 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi33g00012 15 136 bZIP Transcription Factor Family AT3G49760 36.434 2.26e-19 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gabi33g00012 bZIP_1 2.2e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi33g00012 - - gmx:102668006 199.134