Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi33g00011 ATGATGCTTGATGAGGATATGAAGCTTGATGCTGTTCTTGGTCTAGAAACCACCGTGAAAGGTGGTGTTTTGGGTGGCAGCGCCATTGGCAAATTAGATCTGAAGGTGATGATTGAGGAGCTGGAATCAATTGATGTGCCCTCAGTGTTTATCTGTCCAATCTCACTGGAACCAATGCAAGACCCTGTGACCCTTTGCACTGGTCAAACCTATGACAGATCCAACATCCTCAAATGGTTCTCAATTGGTCACAACACTTGTCCCACAACAATGCAAGAACTTTGGGATGATTCTGTCACGCCCAACATGACTCTCAGCCACTTAATCCTCACTTGGTTCTCTCACAAGTACTTGGCCATGAAGAAGAAGCTCGAGGATGTGCAAGGAAGAGTCTTGGACCTCTTGGACACGCTCAAGAAGGTAAAGGGTCAAGCTAGAGTTCGAGCTCTTAAGGATCTTAGGCAACTTGTTGTTACTCATGGGTCTGCAAGGAAGACAGTTGAAGAAAATGGTGGACTTGCTTTGGTTTCTTCTTTATTGGGTCCTTTCACTTCCCACGCTGTTGGGTCTGAAGCAATTGGGATCCTTGTGAATTTGGATTTAAGTTCAGAGTTGAAGAGGAATCTGATTCATCCGGCTAAGGTATCACTATTGGTTGATATTATGAATGAGGGAACAATTGAGACAAAGATGAACTGTGCCAAATTGATTGAAATGTTGTTGATGGAAGGGAATGGCACTGAGATTGAGATTTTCTCAAGCTTGAGTCTTTTATTTGGTTTGTTAAGGTTAGTGAGGGATAAGAAACACCCAACTGGGGTTTTAACTGGTCTCATATTACTTAAGGCTATATGTTCCTATGAATCAGTTAGAAGCTCAGTGATAAGCATAGGAGCAGTTCCTCAATTGATTGAGCTATTGCCCAGTTTGAATAATGAGTGCTTAGAGATAGCACTCTATATTCTAGAGGTATTATCAACCCTTCCTGAAGGAAAAATGGCTTTGAAAGAATGTCCAAACATCATTCCCAATGTGGTCAAGCTGCTAATGAGAGTCTCAGAGAACTGCACCCAATTTGCTTTGTCAATATTGTGGGCTATCTACAAGCTTGCCCCTGAAGAATGTGCATCACAGGCAGTGGAAGCTGGGTTGGCAGCAAAGCTACTGCTAGTAATTCAGAGTGGCTGCAACCCTGTTTTGAAGCAGAGGTCTTCTGAGTTTTTAAAGATGTGTAGTCTGAATTACTCTACTAGTATCTTGATTTCCAAGTGTATGCTCACTACCACAATACAATGA 1296 0.4244 MMLDEDMKLDAVLGLETTVKGGVLGGSAIGKLDLKVMIEELESIDVPSVFICPISLEPMQDPVTLCTGQTYDRSNILKWFSIGHNTCPTTMQELWDDSVTPNMTLSHLILTWFSHKYLAMKKKLEDVQGRVLDLLDTLKKVKGQARVRALKDLRQLVVTHGSARKTVEENGGLALVSSLLGPFTSHAVGSEAIGILVNLDLSSELKRNLIHPAKVSLLVDIMNEGTIETKMNCAKLIEMLLMEGNGTEIEIFSSLSLLFGLLRLVRDKKHPTGVLTGLILLKAICSYESVRSSVISIGAVPQLIELLPSLNNECLEIALYILEVLSTLPEGKMALKECPNIIPNVVKLLMRVSENCTQFALSILWAIYKLAPEECASQAVEAGLAAKLLLVIQSGCNPVLKQRSSEFLKMCSLNYSTSILISKCMLTTTIQ 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi33g00011 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 128 IPR013083 -
Gabi33g00011 431 SUPERFAMILY ARM repeat 133 413 IPR016024 -
Gabi33g00011 431 SMART Ubox_2 49 112 IPR003613 GO:0004842|GO:0016567
Gabi33g00011 431 ProSiteProfiles U-box domain profile. 45 119 IPR003613 GO:0004842|GO:0016567
Gabi33g00011 431 CDD RING-Ubox_PUB 47 99 IPR045210 -
Gabi33g00011 431 Pfam U-box domain 46 116 IPR003613 GO:0004842|GO:0016567
Gabi33g00011 431 SUPERFAMILY RING/U-box 40 114 - -
Gabi33g00011 431 Gene3D - 130 411 IPR011989 -
Gabi33g00011 431 PANTHER WDSAM1 PROTEIN 40 418 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi33g00011 Gabi-Chr33 83968 85521 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi33g00011 31 431 U-box Gene Family AT3G49810 65.586 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi33g00011 - - gmx:100808281 662.144