Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi33g00009 ATGCTGGAAGATGGCACTGTATTTGAGAAAAGAGGAATTGATGAAACGCAACCCTTGAAATTCATAACTGATGAGGAACAAGTGATTACTGGTCTAGACCGAGCAGTGGAAACAATGAAGAAGGGTGAGAGGGCCATAATTAACATACACCCTGATTATGCATTTGGAAATGTTGAAGTGAGGCGAGATTTTGCTATTGTGCCACCAGGCTCAAATGTAGTTTATGACATTGAGATGATGGATTTTATTAAGGAGAAAGCACCATGGGAATTGAATAGTAATGAGAAAATTGAGGTTGCTGGGAGGAAGAAAGAAGAAGGAAATTTATTATTTAAAGGGGGCAAGTATCAGCGAGCAGGGAAGAAGTATGAGAAGGCTGCTGATTTTGTTGGTGAAGATGGATCCTTCGGGGATAATGAGCAAAAGCTAGCTAAGGGACTGAGAGTGTCATGCTGGTTGAATGGTGCAGCTTGTAGCCTTAAACTTAATGACTTTCCTGGAGCAATCAAGCTATGTTCACAGGTGCTTGATATTGAGTTTTACAATGTGAAAGCTTTGTACAGACGAGCGCAAGCATATATAGAGACTGGAGACTATCTTTTGGCAGATGTAGACGTCAAGAAAGCTCTTGAGGTGGATCCACAAAACAGGGAGGTAAAGGTAATTAAGAAGAAATTGAAGCAACTTCAAGCTGACAGTGACAAAAAAGATGCTAAGCTGTATGAAAATATATTTGCACATAAAATAAAGGACTCGCCTGTGGCAACAAAGAGACTGAAGGTTGAGAAAGAAGAGGATGAGAGGAAAAATGAAGAGGCCGTGAGAATGGAAATGGACCAAATTGCTGATAGCGCAGCCCCTTCTGATGGTGGTTTAACTGTTGATTCTTGTTGA 894 0.4083 MLEDGTVFEKRGIDETQPLKFITDEEQVITGLDRAVETMKKGERAIINIHPDYAFGNVEVRRDFAIVPPGSNVVYDIEMMDFIKEKAPWELNSNEKIEVAGRKKEEGNLLFKGGKYQRAGKKYEKAADFVGEDGSFGDNEQKLAKGLRVSCWLNGAACSLKLNDFPGAIKLCSQVLDIEFYNVKALYRRAQAYIETGDYLLADVDVKKALEVDPQNREVKVIKKKLKQLQADSDKKDAKLYENIFAHKIKDSPVATKRLKVEKEEDERKNEEAVRMEMDQIADSAAPSDGGLTVDSC 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi33g00009 297 SMART tpr_5 183 216 IPR019734 GO:0005515
Gabi33g00009 297 SMART tpr_5 149 182 IPR019734 GO:0005515
Gabi33g00009 297 SMART tpr_5 100 133 IPR019734 GO:0005515
Gabi33g00009 297 Gene3D - 1 85 IPR046357 GO:0003755
Gabi33g00009 297 Coils Coil 219 239 - -
Gabi33g00009 297 Coils Coil 256 276 - -
Gabi33g00009 297 ProSiteProfiles TPR repeat profile. 183 216 IPR019734 GO:0005515
Gabi33g00009 297 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 1 83 IPR001179 GO:0003755
Gabi33g00009 297 Pfam Tetratricopeptide repeat 184 216 IPR019734 GO:0005515
Gabi33g00009 297 SUPERFAMILY TPR-like 95 245 IPR011990 GO:0005515
Gabi33g00009 297 SUPERFAMILY FKBP-like 2 100 - -
Gabi33g00009 297 PANTHER PEPTIDYLPROLYL ISOMERASE 3 283 - -
Gabi33g00009 297 FunFam Peptidylprolyl isomerase 88 243 - -
Gabi33g00009 297 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 2 79 IPR001179 GO:0003755
Gabi33g00009 297 Gene3D Tetratricopeptide repeat domain 86 243 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi33g00009 Gabi-Chr33 34909 40169 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi33g00009 2 82 Calmodulin-binding Proteins AT3G25230 33.333 2.41e-07 50.1