LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi33g00008	ATGGAGAAAGGGAGCGGGAATGAGCGGCCTGGTGATTTAGATGAAGTCCTTGTGAAGTATCAGGTGGTGCTAGATGATGGCACTGTTGTAGCAGAAACACCGGAAGGAGGAGTTGAATTTCATGTGAAGGATGGTTATCTTTTTCCTAGATTGCCGAAAGTTATCATGACCATGACAAGGGGAGAGAAGGCTAAATTAATTGTTCAACCTCAGTATGCCTTTGGGGAGATGGGGAGAGAAGCTGGCAGTGGGCTGCATTCAATTCCTCCCAATTCAGTGCTGCATGTTAATATTGAATTGGTGTCCTTCAAACCTGTCATAAATGTTACTGGTGACTCCATGGTGCTTAAGAAGATTTTGAAAGAAGGGGAGGGTGCTTCCACAGCCGATGAGGGTGCAAATGTTACTGTCAGGTACACAGCTATGCTGGAAGATGGCACTGTATTTGAGAAAAGAGGAATTGATGAAACGCAACCCTTGAAATTCATAACTGATGAGGAACAAGTGATTACTGGTCTAGACCGAGCAGTGGAAACAATGAAGAAGGGTGAGAGGGCCATAATTAACATACACCCTGATTATGCATTTGGAAATGTTGAAGTGAGGCGAGATTTTGCTATTGTGCCACCAGGCTCAAATGTAGTTTATGACATTGAGATGATGGATTTTATTAAGGAGAAAGCACCATGGGAATTGAATAGTAATGAGAAAATTGAGGTTGCTGGGAGGAAGAAAGAAGAAGGAAATTTATTATTTAAAGGGGGCAAGTATCAGCGAGCAGGGAAGAAGTATGAGAAGGCTGCTGATTTTGTTGGTGAAGATGGATCCTTCGGGGATAATGAGCAAAAGCTAGCTAAGGGACTGAGAGTGTCATGCTGGTTGAATGGTGCAGCTTGTAGCCTTAAACTTAATGACTTTCCTGGAGCAATCAAGCTATGTTCACAGGTGCTTGATATTGAGTTTTACAATGTGAAAGCTTTGTACAGACGAGCGCAAGCATATATAGAGACTGGAGACTATCTTTTGGCAGATGTAGACGTCAAGAAAGCTCTTGAGGTGGATCCACAAAACAGGGAGGTAAAGGTAATTAAGAAGAAATTGAAGCAACTTCAAGCTGACAGTGACAAAAAAGATGCTAAGCTGTATGAAAATATATTTGCACATAAAATAAAGGACTCGCCTGTGGCAACAAAGAGACTGAAGGTTGAGAAAGAAGAGGATGAGAGGAAAAATGAAGAGGCCGTGAGAATGGAAATGGACCAAATTGCTGATAGCGCAGCCCCTTCTGATGGTGGTTTAACTGTTGATTCTTGTTGA	1317	0.4237	MEKGSGNERPGDLDEVLVKYQVVLDDGTVVAETPEGGVEFHVKDGYLFPRLPKVIMTMTRGEKAKLIVQPQYAFGEMGREAGSGLHSIPPNSVLHVNIELVSFKPVINVTGDSMVLKKILKEGEGASTADEGANVTVRYTAMLEDGTVFEKRGIDETQPLKFITDEEQVITGLDRAVETMKKGERAIINIHPDYAFGNVEVRRDFAIVPPGSNVVYDIEMMDFIKEKAPWELNSNEKIEVAGRKKEEGNLLFKGGKYQRAGKKYEKAADFVGEDGSFGDNEQKLAKGLRVSCWLNGAACSLKLNDFPGAIKLCSQVLDIEFYNVKALYRRAQAYIETGDYLLADVDVKKALEVDPQNREVKVIKKKLKQLQADSDKKDAKLYENIFAHKIKDSPVATKRLKVEKEEDERKNEEAVRMEMDQIADSAAPSDGGLTVDSC	438

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi33g00008	438	ProSiteProfiles	FKBP-type peptidyl-prolyl cis-trans isomerase domain profile.	13	104	IPR001179	GO:0003755
	Gabi33g00008	438	FunFam	Peptidylprolyl isomerase	105	226	-	-
	Gabi33g00008	438	SUPERFAMILY	FKBP-like	110	241	-	-
	Gabi33g00008	438	ProSiteProfiles	TPR repeat profile.	324	357	IPR019734	GO:0005515
	Gabi33g00008	438	Pfam	FKBP-type peptidyl-prolyl cis-trans isomerase	9	101	IPR001179	GO:0003755
	Gabi33g00008	438	Pfam	FKBP-type peptidyl-prolyl cis-trans isomerase	127	220	IPR001179	GO:0003755
	Gabi33g00008	438	ProSiteProfiles	FKBP-type peptidyl-prolyl cis-trans isomerase domain profile.	132	224	IPR001179	GO:0003755
	Gabi33g00008	438	SMART	tpr_5	324	357	IPR019734	GO:0005515
	Gabi33g00008	438	SMART	tpr_5	241	274	IPR019734	GO:0005515
	Gabi33g00008	438	SMART	tpr_5	290	323	IPR019734	GO:0005515
	Gabi33g00008	438	Gene3D	-	105	228	IPR046357	GO:0003755
	Gabi33g00008	438	Gene3D	Tetratricopeptide repeat domain	229	384	IPR011990	GO:0005515
	Gabi33g00008	438	SUPERFAMILY	FKBP-like	3	105	-	-
	Gabi33g00008	438	Gene3D	-	1	104	IPR046357	GO:0003755
	Gabi33g00008	438	Coils	Coil	397	417	-	-
	Gabi33g00008	438	SUPERFAMILY	TPR-like	236	386	IPR011990	GO:0005515
	Gabi33g00008	438	Coils	Coil	360	380	-	-
	Gabi33g00008	438	PANTHER	PEPTIDYLPROLYL ISOMERASE	2	105	-	-
	Gabi33g00008	438	FunFam	Peptidylprolyl isomerase	229	384	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi33g00008	Gabi-Chr33	34908	41937	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi33g00008	4	387	Calmodulin-binding Proteins	AT3G25230	54.545	9.35e-141	412

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi33g00008	K09571		-	gmx:100798382	728.013