Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi33g00007 ATGGTGGTGTTGTCGGACGTAAAGGACGAGGATGAATTCGACGAAGAACCCGGTGAGGTTATCGAATCGGCACCGCCACAAAAGGTTGGCGAAGAGAGGCAACTCAGTAACTCGGGTCTCAAGAAGAAGCTGATCAAGCGCGGACTCGGATGGGAAACCCCTGACTTCAACGACCAAGTAACTGTTCACTATGTTGGGACTTTACTTGATGGAACAAAGTTTGATTCCACTAGGGATACAAATCAACCTATGATATTTACTCTTGGTCAAGGTCAAGTGGTTGCTGGGTTGGATCATGGGGTTATAACCATGAAGAAGGGAGAGGTAGCATTGTTCACATTGCCTGATGATTCTAGAGGCATTTTGCAGTTTGAGGTGGAACTCATTTCGTGGATCAAAGTGGTGGATGTTTGCAAAGATGGTGGAATTCTCAAGAAAATTATGGAGAAAGGGAGCGGGAATGAGCGGCCTGGTGATTTAGATGAAGTCCTTGTGAAGTATCAGGTGGTGCTAGATGATGGCACTGTTGTAGCAGAAACACCGGAAGGAGGAGTTGAATTTCATGTGAAGGATGGTTATCTTTTTCCTAGATTGCCGAAAGTTATCATGACCATGACAAGGGGAGAGAAGGCTAAATTAATTGTTCAACCTCAGTATGCCTTTGGGGAGATGGGGAGAGAAGCTGGCAGTGGGCTGCATTCAATTCCTCCCAATTCAGTGCTGCATGTTAATATTGAATTGGTGTCCTTCAAACCTGTCATAAATGTTACTGGTGACTCCATGGTGCTTAAGAAGATTTTGAAAGAAGGGGAGGGTGCTTCCACAGCCGATGAGGGTGCAAATGTTACTGTCAGGTACACAGCTATGCTGGAAGATGGCACTGTATTTGAGAAAAGAGGAATTGATGAAACGCAACCCTTGAAATTCATAACTGATGAGGAACAAGTGATTACTGGTCTAGACCGAGCAGTGGAAACAATGAAGAAGGGTGAGAGGGCCATAATTAACATACACCCTGATTATGCATTTGGAAATGTTGAAGTGAGGCGAGATTTTGCTATTGTGCCACCAGGCTCAAATGTAGTTTATGACATTGAGATGATGGATTTTATTAAGGAGAAAGCACCATGGGAATTGAATAGTAATGAGAAAATTGAGGTTGCTGGGAGGAAGAAAGAAGAAGGAAATTTATTATTTAAAGGGGGCAAGTATCAGCGAGCAGGGAAGAAGTATGAGAAGGCTGCTGATTTTGTTGGTGAAGATGGATCCTTCGGGGATAATGAGCAAAAGCTAGCTAAGGGACTGAGAGTGTCATGCTGGTTGAATGGTGCAGCTTGTAGCCTTAAACTTAATGACTTTCCTGGAGCAATCAAGCTATGTTCACAGGTGCTTGATATTGAGTTTTACAATGTGAAAGCTTTGTACAGACGAGCGCAAGCATATATAGAGACTGGAGACTATCTTTTGGCAGATGTAGACGTCAAGAAAGCTCTTGAGGTGGATCCACAAAACAGGGAGGTAAAGGTAATTAAGAAGAAATTGAAGCAACTTCAAGCTGACAGTGACAAAAAAGATGCTAAGCTGTATGAAAATATATTTGCACATAAAATAAAGGACTCGCCTGTGGCAACAAAGAGACTGAAGGTTGAGAAAGAAGAGGATGAGAGGAAAAATGAAGAGGCCGTGAGAATGGAAATGGACCAAATTGCTGATAGCGCAGCCCCTTCTGATGGTGGTTTAACTGTTGATTCTTGTTGA 1758 0.4317 MVVLSDVKDEDEFDEEPGEVIESAPPQKVGEERQLSNSGLKKKLIKRGLGWETPDFNDQVTVHYVGTLLDGTKFDSTRDTNQPMIFTLGQGQVVAGLDHGVITMKKGEVALFTLPDDSRGILQFEVELISWIKVVDVCKDGGILKKIMEKGSGNERPGDLDEVLVKYQVVLDDGTVVAETPEGGVEFHVKDGYLFPRLPKVIMTMTRGEKAKLIVQPQYAFGEMGREAGSGLHSIPPNSVLHVNIELVSFKPVINVTGDSMVLKKILKEGEGASTADEGANVTVRYTAMLEDGTVFEKRGIDETQPLKFITDEEQVITGLDRAVETMKKGERAIINIHPDYAFGNVEVRRDFAIVPPGSNVVYDIEMMDFIKEKAPWELNSNEKIEVAGRKKEEGNLLFKGGKYQRAGKKYEKAADFVGEDGSFGDNEQKLAKGLRVSCWLNGAACSLKLNDFPGAIKLCSQVLDIEFYNVKALYRRAQAYIETGDYLLADVDVKKALEVDPQNREVKVIKKKLKQLQADSDKKDAKLYENIFAHKIKDSPVATKRLKVEKEEDERKNEEAVRMEMDQIADSAAPSDGGLTVDSC 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi33g00007 585 Gene3D - 32 133 IPR046357 GO:0003755
Gabi33g00007 585 Gene3D Tetratricopeptide repeat domain 376 531 IPR011990 GO:0005515
Gabi33g00007 585 Coils Coil 507 527 - -
Gabi33g00007 585 Coils Coil 544 564 - -
Gabi33g00007 585 FunFam Peptidylprolyl isomerase 252 373 - -
Gabi33g00007 585 SUPERFAMILY FKBP-like 34 134 - -
Gabi33g00007 585 SUPERFAMILY TPR-like 383 533 IPR011990 GO:0005515
Gabi33g00007 585 FunFam Peptidylprolyl isomerase 376 531 - -
Gabi33g00007 585 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 279 371 IPR001179 GO:0003755
Gabi33g00007 585 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 156 248 IPR001179 GO:0003755
Gabi33g00007 585 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 274 367 IPR001179 GO:0003755
Gabi33g00007 585 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 53 115 IPR001179 GO:0003755
Gabi33g00007 585 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 57 251 IPR001179 GO:0003755
Gabi33g00007 585 PANTHER PEPTIDYLPROLYL ISOMERASE 133 252 - -
Gabi33g00007 585 SUPERFAMILY FKBP-like 257 388 - -
Gabi33g00007 585 Gene3D - 251 375 IPR046357 GO:0003755
Gabi33g00007 585 FunFam Peptidylprolyl isomerase 135 251 - -
Gabi33g00007 585 Gene3D - 134 250 IPR046357 GO:0003755
Gabi33g00007 585 SMART tpr_5 471 504 IPR019734 GO:0005515
Gabi33g00007 585 SMART tpr_5 388 421 IPR019734 GO:0005515
Gabi33g00007 585 SMART tpr_5 437 470 IPR019734 GO:0005515
Gabi33g00007 585 MobiDBLite consensus disorder prediction 1 35 - -
Gabi33g00007 585 ProSiteProfiles TPR repeat profile. 471 504 IPR019734 GO:0005515
Gabi33g00007 585 SUPERFAMILY FKBP-like 136 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi33g00007 Gabi-Chr33 34907 42166 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi33g00007 28 534 Calmodulin-binding Proteins AT3G25230 54.511 0.0 554
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi33g00007 K09571 - gmx:100798382 911.368