Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi33g00006 ATGGTGGTGTTGTCGGACGTAAAGGACGAGGATGAATTCGACGAAGAACCCGGTGAGGTTATCGAATCGGCACCGCCACAAAAGGTTGGCGAAGAGAGGCAACTCAGTAACTCGGGTCTCAAGAAGAAGCTGATCAAGCGCGGACTCGGATGGGAAACCCCTGACTTCAACGACCAAGTAACTGTTCACTATGTTGGGACTTTACTTGATGGAACAAAGTTTGATTCCACTAGGGATACAAATCAACCTATGATATTTACTCTTGGTCAAGGTCAAGTGGTTGCTGGGTTGGATCATGGGGTTATAACCATGAAGAAGGGAGAGGTAGCATTGTTCACATTGCCTGATGATTCTAGAGGCATTTTGCAGTTTGAGGTGGAACTCATTTCGTGGATCAAAGTGGTGGATGTTTGCAAAGATGGTGGAATTCTCAAGAAAATTATGGAGAAAGGGAGCGGGAATGAGCGGCCTGGTGATTTAGATGAAGTCCTTGTGAAGTATCAGGTGGTGCTAGATGATGGCACTGTTGTAGCAGAAACACCGGAAGGAGGAGTTGAATTTCATGTGAAGGATGGTTATCTTTTTCCTAGATTGCCGAAAGTTATCATGACCATGACAAGGGGAGAGAAGGCTAAATTAATTGTTCAACCTCAGTATGCCTTTGGGGAGATGGGGAGAGAAGCTGGCAGTGGGCTGCATTCAATTCCTCCCAATTCAGTGCTGCATGTTAATATTGAATTGGTGTCCTTCAAACCTGTCATAAATGTTACTGGTGACTCCATGGTGCTTAAGAAGATTTTGAAAGAAGGGGAGGGTGCTTCCACAGCCGATGAGGGTGCAAATGTTACTGTCAGGTACACAGCTATGCTGGAAGATGGCACTGTATTTGAGAAAAGAGGAATTGATGAAACGCAACCCTTGAAATTCATAACTGATGAGGAACAAGTGATTACTGGTCTAGACCGAGCAGTGGAAACAATGAAGAAGGGTGAGAGGGCCATAATTAACATACACCCTGATTATGCATTTGGAAATGTTGAAGTGAGGCGAGATTTTGCTATTGTGCCACCAGGCTCAAATGTAGTTTATGACATTGAGATGATGGATTTTATTAAGGTGCTTGATATTGAGTTTTACAATGTGAAAGCTTTGTACAGACGAGCGCAAGCATATATAGAGACTGGAGACTATCTTTTGGCAGATGTAGACGTCAAGAAAGCTCTTGAGGTGGATCCACAAAACAGGGAGGTAAAGGTAATTAAGAAGAAATTGAAGCAACTTCAAGCTGACAGTGACAAAAAAGATGCTAAGCTGTATGAAAATATATTTGCACATAAAATAAAGGACTCGCCTGTGGCAACAAAGAGACTGAAGGTTGAGAAAGAAGAGGATGAGAGGAAAAATGAAGAGGCCGTGAGAATGGAAATGGACCAAATTGCTGATAGCGCAGCCCCTTCTGATGGTGGTTTAACTGTTGATTCTTGTTGA 1488 0.4328 MVVLSDVKDEDEFDEEPGEVIESAPPQKVGEERQLSNSGLKKKLIKRGLGWETPDFNDQVTVHYVGTLLDGTKFDSTRDTNQPMIFTLGQGQVVAGLDHGVITMKKGEVALFTLPDDSRGILQFEVELISWIKVVDVCKDGGILKKIMEKGSGNERPGDLDEVLVKYQVVLDDGTVVAETPEGGVEFHVKDGYLFPRLPKVIMTMTRGEKAKLIVQPQYAFGEMGREAGSGLHSIPPNSVLHVNIELVSFKPVINVTGDSMVLKKILKEGEGASTADEGANVTVRYTAMLEDGTVFEKRGIDETQPLKFITDEEQVITGLDRAVETMKKGERAIINIHPDYAFGNVEVRRDFAIVPPGSNVVYDIEMMDFIKVLDIEFYNVKALYRRAQAYIETGDYLLADVDVKKALEVDPQNREVKVIKKKLKQLQADSDKKDAKLYENIFAHKIKDSPVATKRLKVEKEEDERKNEEAVRMEMDQIADSAAPSDGGLTVDSC 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi33g00006 495 Gene3D - 252 367 IPR046357 GO:0003755
Gabi33g00006 495 Gene3D - 134 251 IPR046357 GO:0003755
Gabi33g00006 495 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 141 253 - -
Gabi33g00006 495 FunFam Peptidylprolyl isomerase 135 251 - -
Gabi33g00006 495 SUPERFAMILY FKBP-like 136 251 - -
Gabi33g00006 495 Coils Coil 454 474 - -
Gabi33g00006 495 Gene3D Tetratricopeptide repeat domain 368 444 IPR011990 GO:0005515
Gabi33g00006 495 SUPERFAMILY FKBP-like 34 142 - -
Gabi33g00006 495 ProSiteProfiles TPR repeat profile. 381 414 IPR019734 GO:0005515
Gabi33g00006 495 Gene3D - 32 133 IPR046357 GO:0003755
Gabi33g00006 495 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 156 248 IPR001179 GO:0003755
Gabi33g00006 495 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 274 367 IPR001179 GO:0003755
Gabi33g00006 495 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 53 115 IPR001179 GO:0003755
Gabi33g00006 495 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 279 371 IPR001179 GO:0003755
Gabi33g00006 495 SMART tpr_5 381 414 IPR019734 GO:0005515
Gabi33g00006 495 SUPERFAMILY FKBP-like 257 380 - -
Gabi33g00006 495 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 57 251 IPR001179 GO:0003755
Gabi33g00006 495 SUPERFAMILY TPR-like 369 443 IPR011990 GO:0005515
Gabi33g00006 495 Coils Coil 417 437 - -
Gabi33g00006 495 FunFam Peptidylprolyl isomerase 252 373 - -
Gabi33g00006 495 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi33g00006 Gabi-Chr33 34907 42166 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi33g00006 35 444 Calmodulin-binding Proteins AT3G25230 31.293 9.65e-45 163