Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi339g00003 ATGGATTGTTCCTCCATCCTTCACTCATCAAACTCCTATTTCTCATCAGAATCTTCATTTGGGTCACCGGATTCATTCTCTTTGAACCTCGAGAATGATCACTACTACCTTCCCTTCAATGAAAACGACCCAGAAGAGATGCTTCTGTATGGCATGATCACATCCCAACAACAAGAACAACAACAAACAGTTGACACATGCAGTGTCAAGGAAAATAATGTGAGGGAGGAGAAGAAGACCTACAGAGGTGTCCGGCGGCGGCCGTGGGGGAAGTTCGCGGCGGAGATAAGAGATTCCACGAGACATGGCATAAGGGTGTGGTTGGGGACATTTGAAAGTGCAGAAGAAGCAGCACTAGCTTATGATCAAGCTGCTTTTGCTGTGAGAGGCTCTGCAGCAATACTCAACTTCCCAGTTGAGAGGGTGAAGGAGTCACTTAGGGAGATGAATTATCAATCTCATGATCATGATCGTGATGATTGGTGTTCACCTGTTGTGGCTTTGAAGAGAAAACACTCCATGAGAAGAAAATTGAGTGCCAAAAAGAAGAAAAACACAGATGTTAGGATAGACAATGTTGTTGTCTTGGAAGATCTAGGTGCAGAATATTTGGAACAATTATTGATGTCCTCTGACAATGATAATCCTAGTACTTGGTGA 660 0.4364 MDCSSILHSSNSYFSSESSFGSPDSFSLNLENDHYYLPFNENDPEEMLLYGMITSQQQEQQQTVDTCSVKENNVREEKKTYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFESAEEAALAYDQAAFAVRGSAAILNFPVERVKESLREMNYQSHDHDRDDWCSPVVALKRKHSMRRKLSAKKKKNTDVRIDNVVVLEDLGAEYLEQLLMSSDNDNPSTW 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi339g00003 219 SUPERFAMILY DNA-binding domain 80 140 IPR016177 GO:0003677
Gabi339g00003 219 MobiDBLite consensus disorder prediction 1 20 - -
Gabi339g00003 219 SMART rav1_2 80 144 IPR001471 GO:0003700|GO:0006355
Gabi339g00003 219 PRINTS Ethylene responsive element binding protein signature 81 92 IPR001471 GO:0003700|GO:0006355
Gabi339g00003 219 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700|GO:0006355
Gabi339g00003 219 PANTHER DNA-BINDING DOMAIN 44 210 IPR044808 GO:0003700|GO:0009873
Gabi339g00003 219 ProSiteProfiles AP2/ERF domain profile. 80 138 IPR001471 GO:0003700|GO:0006355
Gabi339g00003 219 CDD AP2 81 139 IPR001471 GO:0003700|GO:0006355
Gabi339g00003 219 Gene3D AP2/ERF domain 79 140 IPR036955 GO:0003700|GO:0006355
Gabi339g00003 219 FunFam Ethylene-responsive transcription factor 2 79 140 - -
Gabi339g00003 219 Pfam AP2 domain 81 130 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi339g00003 Gabi-Chr339 139767 140426 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi339g00003 6 219 AP2-EREBP Transcription Factor Family AT3G23240 59.193 7.18e-82 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi339g00003 AP2 7.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi339g00003 K14516 - qsa:O6P43_003228 256.144