Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3399g00050 ATGTCGAACGGCATGGGATTTCAGGAGCAGCATTCGAACCACAACGCGAACAACGCAGCAACGATGATGCGCGGGAATGTCTCCATGACCCAAAAACAAATCGAGACTCTGAGGATACAAATTGCTGCTTACGAAACCCTCTCTGAACAACTCGCTGAGAAGTACAGGGCACACCGTGCCGCTCGCCAAGCTCCTCCTCAGGTTGTAACAAATATACTGAAACAAATGGGTGTGGTGTTTTCAGTGACGTCAGAGGTGGTTAAGCCGGTAAATATGTATGGAGGAGACACATCAAAGGGAATATTTAACATGAAGCCGAGGTGGACTCCAACAACTGAGCAGCTTCAGATCATGGAGAAAATATTTAAGCAGGTGACACCGAATCCAGACAGGAAAAGGATAAACGAGATTACTGCGGAACTCGCCAATCATGGAAATATTTCGGAGAAAAATGTCTGTAATTGGTTCCAGAATAAGCGTGCTCGGTCCAAGAAAAAACAGCCCATTGCGGTTATTGCAAATAATGTTAACACTAATGGCCAGTTGACATCAGGAGATAACCGCTATCAAATGAAATAA 579 0.4491 MSNGMGFQEQHSNHNANNAATMMRGNVSMTQKQIETLRIQIAAYETLSEQLAEKYRAHRAARQAPPQVVTNILKQMGVVFSVTSEVVKPVNMYGGDTSKGIFNMKPRWTPTTEQLQIMEKIFKQVTPNPDRKRINEITAELANHGNISEKNVCNWFQNKRARSKKKQPIAVIANNVNTNGQLTSGDNRYQMK 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3399g00050 192 PANTHER WUSCHEL-RELATED HOMEOBOX 13 12 177 IPR044559 GO:0003700
Gabi3399g00050 192 SMART HOX_1 103 170 IPR001356 GO:0003677
Gabi3399g00050 192 ProSiteProfiles 'Homeobox' domain profile. 101 166 IPR001356 GO:0003677
Gabi3399g00050 192 Gene3D - 106 169 - -
Gabi3399g00050 192 Pfam Homeodomain 105 165 IPR001356 GO:0003677
Gabi3399g00050 192 SUPERFAMILY Homeodomain-like 104 171 IPR009057 -
Gabi3399g00050 192 Coils Coil 34 54 - -
Gabi3399g00050 192 CDD homeodomain 105 167 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3399g00050 Gabi-Chr3399 459399 460171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3399g00050 29 187 Wox Gene Family AT1G20700 37.576 5.45e-30 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Gabi3399g00050 Homeodomain 6.7e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3399g00050 - - cic:CICLE_v10026199mg 112.079