Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3399g00043 ATGATGAAGAGAGAAAGAGAGGTTGATAGCATGAACATGGCAAATTGTTTGATGCTGCTTTCTCGTGGAGGTGAATTTGAGGCCATGTATTCAAGCTCTTGTAATAATAACAACAACCGTGTGTTTGAGTGCAAGACATGTAACAGGCAATTCCCTTCATTTCAGGCACTTGGTGGCCACAGGGCTAGCCACAAGAAGCCAAGGTTGATGGCTGGAGATGGAGACATGAATGGACAATTGCTTAATGGTTCACCCCCAAAGCCTAAAACACATGAGTGTTCCATTTGTGGGTTGGAATTTGCAATAGGACAAGCCTTAGGTGGCCACATGAGGAGGCACAGAGCTGCTGCAAATTCCAATGGAAACATGAGGAATTCTATGACTATGAGTAGTAGTAGTGGTAGTGGCAGTGGTGGTAGCACTCTTGATTCATCACCAAACAGGCTTGATTTTAAAGCTGGTAACAAGAGAGTTTTGGTTCTTGATTTGAATTTGACACCCTTGGAGAATGATTTGGAGTTTTTGAAGATTGGAAAGCCAACTGCTTTGGTTGATTATTTGTATTGA 567 0.425 MMKREREVDSMNMANCLMLLSRGGEFEAMYSSSCNNNNNRVFECKTCNRQFPSFQALGGHRASHKKPRLMAGDGDMNGQLLNGSPPKPKTHECSICGLEFAIGQALGGHMRRHRAAANSNGNMRNSMTMSSSSGSGSGGSTLDSSPNRLDFKAGNKRVLVLDLNLTPLENDLEFLKIGKPTALVDYLY 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3399g00043 188 MobiDBLite consensus disorder prediction 118 148 - -
Gabi3399g00043 188 SUPERFAMILY beta-beta-alpha zinc fingers 40 113 IPR036236 -
Gabi3399g00043 188 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 69 IPR013087 -
Gabi3399g00043 188 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Gabi3399g00043 188 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
Gabi3399g00043 188 MobiDBLite consensus disorder prediction 117 148 - -
Gabi3399g00043 188 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 118 IPR013087 -
Gabi3399g00043 188 Gene3D Classic Zinc Finger 39 113 - -
Gabi3399g00043 188 SMART c2h2final6 42 64 IPR013087 -
Gabi3399g00043 188 SMART c2h2final6 91 113 IPR013087 -
Gabi3399g00043 188 Pfam C2H2-type zinc finger 91 115 - -
Gabi3399g00043 188 Pfam C2H2-type zinc finger 41 67 - -
Gabi3399g00043 188 PANTHER ZINC FINGER PROTEIN ZAT5 5 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3399g00043 Gabi-Chr3399 366374 367175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3399g00043 12 179 C2H2 Transcription Factor Family AT2G28710 44.643 7.51e-39 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3399g00043 zf-C2H2_6 9.6e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3399g00043 - - gmx:100500371 268.47