Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3399g00041 ATGATGATATCAAGGGGATTGTTCGGGTGGTCACCACCTCACGTACAACCGCTCACGCCGGTGTCGGAGGTATCGGAGCCTCCGGAATCGCCGTCTCCGTACATGGACCCCGGCGCCGAGACCTCCGCTTCACAGCAGGTTGAGGTCGAGGAGGAGATGGAGGAACCGGAGGAGATCGAGCCGCCGCCAGCCGCTGTTCCTTTCTCAGGGCTCTTCGCATGCGCAGACAGTTTCGATTGGTTCCTCATGGCCGTCGGTTCCATCGCTGCCGCGGCTCACGGCACGGCGCTCGTCGTTTACTTGCACTACTTCGCGAAGATTATCCATGTGTTGCGGATGGATCCTCAGCATAGCACGTCGCAGGAACAGTTTCACAGGTTCACCGAGCTTGCTTTAACCATTGTTTATATTGCTGGAGGAGTTTTTGCTGCTGGTTGGATTGAGGTTTCATGTTGGATTTTGACTGGAGAAAGGCAGACAGCTGTCATCAGGTCAAAATATGTTCAAGTATTACTAAATCAGGATATGAGTTTTTTTGATACTTATGGGAACAACGGAGACATTGTGAGTCAAGTTTTGAGTGATGTGCTGCTTATACAGTCTGCCCTTAGTGAAAAAGTTGGAAATTATATTCATAACATGGCTACATTCTTCAGTGGTCTTGTCATTGGATTTTTCAATTGTTGGCAGATTGCTTTGATAACATTAGCCACAGGTCCATTTATTGTGGCTGCTGGAGGAATATCAAATATATTCCTCCATCGGCTTGCAGAGAATATTCAAGATGCATATGCTGAAGCAGCTGGCATTGCTGAACAGGCAGTTTCCTATGTCAGGACATTGTATGCTTTTACAAATGAAACATTGGCCAAGTATTCATATGCAACATCACTGCAAGCTACTCTTAGATATGGTATATTAATAAGTCTCGTTCAAGGGCTTGGTCTTGGATTTACGTATGGCCTTGCAATATGTTCTTGTGCATTACAACTCTGGGTTGGAAGATTCTTGGTCATTCACGGAAAAGCGCATGGTGGTCAAATTATAACAGCTCTGTTTGCTGTAATTCTTAGTGGCCTGGGATTGAATCAAGCTGCAACAAATTTCTACTCATTTGATCAAGGGCGAATAGCTGCTTATAGACTATTTGAGATGATAAGCCGGTCATCCTCATCTGTTAATCATGAAGGCACTGCTCCTGATTCTGTGCAAGGAAATATAGAGTTTCGGAATGTTTATTTCAGCTATCTGTCTCGTCCTGAAATCCCTATCTTGAGTGGATTTTATCTCACTGTACCTGCCAAGAAAGCTGTGGCACTTGTTGGCAGAAATGGCTCTGGAAAAAGTAGTATTATTCCTCTCATGGAGCGTTTCTATGATCCTACTTTAGGAGAAGTTCTTTTAGATGGCGAAAACATCAAGAATTTGAAACTGGAATGGCTGAGGAGCCAAATAGGACTAGTCACCCAGGAGCCTGCTTTGCTCAGTTTGAGTATAAGAGACAACATTGCTTATGGGAGGGATGCCACCATGGATCAAATTGAAGAGGCTGCTAAAATAGCTCATGCACATACATTTATCAGCTCATTAGAGAAAGGTTATGACATGCAGGTTGGCAGGGCTGGTCTAGCTTTGACCGAAGAGCAGAAAATAAAACTCTCTATTGCAAGAGCTGTGCTTCTAAATCCGTCAATTCTTCTGCTTGATGAGGTTACTGGTGGACTTGATTTCGAGGCTGAGAGGGCTGTTCAGGAGGCTCTGGATCTGCTTATGTTGGGACGCTCAACAATAATAATTGCTCGAAGGCTTAGTCTCATAAGGAATGCCGATTATATAGCAGTTATGGAGGAAGGTCAACTTGTTGAAATGGGTACTCATGATGAATTATTGACCCTGGATGGCTTATATGCAGAGCTTCTTAGATGCGAAGAGGCAGCAAAACTTCCCAAGAGGATGCCTGTTCGGAACTACAAGGAGACTGCAGCATTCCAAATTGAGAAGGAATCCTCTGCAAGTCATAGCTTCAAAGAACCATCATCCCCTAAAATGATCAAGTCACCCTCTCTTCAAAGAGTTTCTAATGTATCCCGACCTCCTGATGGCATCTTTAACTTGCAAGAATCACCAAAAGTTCGGAGCCCACCACCTGAGAAGATGGTGGAAAATGGTCAGGATTTGGATGCAGCAGATAAGGAGCCATCAATAAGAAGGCAGGACAGTTTTGAAATGAGACTGCCGGAGCTACCCAAGATTGATGTTCAGTCTGTGCATCGACAAACATCAAATGATTCTGACCCAGAATCCCCTGTTTCACCACTTTTAACATCTGATCCTAAAAATGAACGCTCCCATTCACAGACTTTTAGTAGACCACATAGTCATTCTGATGATATTTCAGTTAAAATGAGAGAAACAAAGGATGCGCGGCATGGAAAACCACCATCACTTAAGAAGCTGGCTGAGCTTAGTAATGCTGAGTGGCTTTATGCTGTGTTAGGAAGCATAGGTGCTGCTATCTTTGGTTCTTTCAATCCCCTTCTTGCTTATGTTATTGGCCTTGTGGTGACAGCCTACTATAGAATAGATGATCATCATCACTTACATCGGGAGGTAGACAAGTGGTGCTTGATCATCGGCTGCATGGGTATTGTGACAGTTGTTGCCAACTTTTTGCAGCATTTCTACTTTGGTATTATGGGAGAGAAAATGACAGAAAGAGTTAGGAGAATGATGTTCTCAGCCATGCTACGCAATGAAGTGGGATGGTTTGATGATGAGGAAAACAGTGCTGACAATTTATCCATGCGATTGGCCAATGATGCTACTTTCGTACGTGCTGCTTTTAGCAACCGGCTTTCTATATTCATACAGGACAGTGCTGCAGTCATTGTTGGTCTTCTTGTTGGTGCTTTGCTTCACTGGCGCTTAGCACTTGTGGCTTTTGCAACCCTTCCAATTCTCTGTGTTTCTGCCATTGCCCAGAAATTGTGGCTTGCTGGATTTTCAAGGGGCATACAGGAAATGCACAGAAAGGCGTCTTTGGTTCTTGAAGATGCAGTTAGAAACATTTACACTGTTGTTGCTTTTTGTGCTGGTAATAAGGTAATGGAGCTCTATAGGCTGCAGCTGAAGAAAATATTTAAGCAGAGCTTTCTTCATGGGATGGCAATTGGATTTGCATTTGGCTTTTCACAGTTTCTACTTTTTGCTTGCAATGCCCTTCTACTTTGGTACACTGCGGTATGTATAAGAAATGGTTACATGGATCCACCTACTGCACTCAAGGAGTACATGGTTTTCTCATTTGCAACATTTGCACTTGTGGAGCCCTTTGGGTTGGCTCCTTACATACTGAAACGACGAAAATCTCTCATATCAGTGTTTGAAATTATAGATCGTGTGCCTAAAATTGATCCTGATGATAGCTCGGCATTGAAGCCACCCAATGTATATGGAAGCATTGAGTTAAAAAATATTGATTTTTGTTACCCATCTCGTCCAGAAGTGTTGGTATTGAGCAATTTTAGTCTCAAAGTCAATGGGGGGCAAACCGTTGCTGTTGTGGGTGTTTCAGGGTCAGGGAAGAGCACTATAATATCTTTGATTGAGAGATTTTATGATCCAGTTGCTGGCCAAGTTTTACTGGATGGGAGGGATTTAAAGCTCTATAACTTGAGATGGTTGAGGAGCCACCTTGGTCTGGTTCAGCAGGAACCTATTATCTTCTCAACCACCATAAGGGAAAACATTATATATGCAAGGCATAATGCCAGTGAAGCTGAGATGAAAGAGGCTGCAAGAATAGCAAATGCTCATCATTTCATTAGCAGCTTGCCTCATGGTTATGACACTCATATTGGGATGAGAGGTGTTGACTTAACCCCCGGACAGAAACAGAGAATCGCAATTGCAAGGGTAGTGCTGAAAAATGCACCTATCTTATTGTTGGATGAGGCAAGTTCATCAATTGAATCTGAGTCAAGCCGAGTGGTGCAAGAGGCTTTAGACACGCTAATAATGGGAAACAAGACCACTATTTTAATAGCGCATAGGGCTGCAATGATGAGGCATGTGGACAATATTGTAGTGCTTAATGGAGGACGGATAGTGGAGGAAGGGACTCATGATTCGTTGGTGGCAAAGAATGGTCTGTATGTCCGATTAATGCAACCTCATTTTGGTAAGGCTTTGCGTCAGCATCGGCTTGTTTAG 4212 0.4366 MMISRGLFGWSPPHVQPLTPVSEVSEPPESPSPYMDPGAETSASQQVEVEEEMEEPEEIEPPPAAVPFSGLFACADSFDWFLMAVGSIAAAAHGTALVVYLHYFAKIIHVLRMDPQHSTSQEQFHRFTELALTIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSKYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIGFFNCWQIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAAGIAEQAVSYVRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVIHGKAHGGQIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMISRSSSSVNHEGTAPDSVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATMDQIEEAAKIAHAHTFISSLEKGYDMQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMEEGQLVEMGTHDELLTLDGLYAELLRCEEAAKLPKRMPVRNYKETAAFQIEKESSASHSFKEPSSPKMIKSPSLQRVSNVSRPPDGIFNLQESPKVRSPPPEKMVENGQDLDAADKEPSIRRQDSFEMRLPELPKIDVQSVHRQTSNDSDPESPVSPLLTSDPKNERSHSQTFSRPHSHSDDISVKMRETKDARHGKPPSLKKLAELSNAEWLYAVLGSIGAAIFGSFNPLLAYVIGLVVTAYYRIDDHHHLHREVDKWCLIIGCMGIVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDDEENSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVGLLVGALLHWRLALVAFATLPILCVSAIAQKLWLAGFSRGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFKQSFLHGMAIGFAFGFSQFLLFACNALLLWYTAVCIRNGYMDPPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSALKPPNVYGSIELKNIDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRSHLGLVQQEPIIFSTTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTHIGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLVAKNGLYVRLMQPHFGKALRQHRLV 1403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3399g00041 1403 SUPERFAMILY ABC transporter transmembrane region 813 1139 IPR036640 GO:0005524|GO:0016020
Gabi3399g00041 1403 CDD ABC_6TM_Pgp_ABCB1_D2_like 826 1137 - -
Gabi3399g00041 1403 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 407 642 IPR003439 GO:0005524
Gabi3399g00041 1403 Gene3D - 1144 1398 IPR027417 -
Gabi3399g00041 1403 MobiDBLite consensus disorder prediction 754 782 - -
Gabi3399g00041 1403 FunFam ABC transporter B family member 20 1144 1393 - -
Gabi3399g00041 1403 Gene3D - 397 644 IPR027417 -
Gabi3399g00041 1403 PANTHER ABC TRANSPORTER B FAMILY 48 884 IPR039421 -
Gabi3399g00041 1403 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1154 1391 IPR003439 GO:0005524
Gabi3399g00041 1403 Gene3D ABC transporter type 1, transmembrane domain 801 1142 IPR036640 GO:0005524|GO:0016020
Gabi3399g00041 1403 Pfam ABC transporter transmembrane region 836 1100 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3399g00041 1403 Pfam ABC transporter transmembrane region 86 357 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3399g00041 1403 FunFam ABC transporter B family member 20 397 644 - -
Gabi3399g00041 1403 Pfam ABC transporter 1172 1320 IPR003439 GO:0005524
Gabi3399g00041 1403 Pfam ABC transporter 428 572 IPR003439 GO:0005524
Gabi3399g00041 1403 SUPERFAMILY ABC transporter transmembrane region 71 382 IPR036640 GO:0005524|GO:0016020
Gabi3399g00041 1403 FunFam ABC transporter B family member 20 70 409 - -
Gabi3399g00041 1403 CDD ABC_6TM_Pgp_ABCB1_D1_like 83 382 - -
Gabi3399g00041 1403 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 831 1123 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3399g00041 1403 MobiDBLite consensus disorder prediction 667 701 - -
Gabi3399g00041 1403 MobiDBLite consensus disorder prediction 667 814 - -
Gabi3399g00041 1403 MobiDBLite consensus disorder prediction 783 814 - -
Gabi3399g00041 1403 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1143 1390 IPR027417 -
Gabi3399g00041 1403 FunFam ABC transporter B family member 6 771 999 - -
Gabi3399g00041 1403 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 398 641 IPR027417 -
Gabi3399g00041 1403 MobiDBLite consensus disorder prediction 17 61 - -
Gabi3399g00041 1403 Gene3D ABC transporter type 1, transmembrane domain 71 660 IPR036640 GO:0005524|GO:0016020
Gabi3399g00041 1403 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 84 374 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3399g00041 1403 SMART AAA_5 1181 1368 IPR003593 GO:0016887
Gabi3399g00041 1403 SMART AAA_5 434 613 IPR003593 GO:0016887
Gabi3399g00041 1403 MobiDBLite consensus disorder prediction 723 746 - -
Gabi3399g00041 1403 FunFam ABC transporter B family member 6 1001 1151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3399g00041 Gabi-Chr3399 333618 345265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3399g00041 53 699 Calmodulin-binding Proteins AT2G36910 44.104 6.59e-168 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3399g00041 K05658 - gmx:100789116 2544.23