Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3399g00034 ATGGTGGGTAACGATGATGCTCGTGCGAAAATGTTCTGGCGGTCGGCTTCTTGGTCCTCTTCCCGCTCCGCCGCCGCCGCCAACAATAACAGCAACACTTCCGGCGAGGCGGAGAAAGATTATGCGGCGGATCGTGACAGCATCAACGGCCAGAACCGGAGGTTTCCTCCGCCCCCATTGACCCCTCGATCGCAGCAAAATTGCAAGGCGCGGTCGTGCTTGCCGCCGCTGCAGCCGCTATCAATTGCTCGCCGGAGCTTGGATGAGTGGCCGAAGGCTAGCTCCGACGACATAGGGGAGTGGCCACAGCCGCCTACAACCCCTGGTGGTGGTGGGAGAGGTAATAATAATGGTGAAAGGTTGAAACTTGATTTGTCTTCTATCCAGCAGAACCATGATAATAAGAATAATAATGGTGGGCTTGTGAAGAGGGATAAGATTGCTTTTTTTGATAAGGAATGCTCAAAAGTTGCTGATCATGTGTATCTTGGTGGTGATGCTGTTGCTAGGGATAAGGATATTTTGAAACAGAATGGGATAACCCATGTTTTGAATTGTGTGGGTTTTGTGTGTCCTGAGTACTTCAAGAATGATTTTGTGTATAGGACTTTGTGGCTGCAGGATAGTCCATCTGAGGATATTACTAGTATTCTGTATGATGTGTTTGACTACTTTGAGGATGTTAGGGAACAAAGTGGGAGAGTTTTTGTGCATTGTTGCCAAGGGGTGTCTAGGTCAACTTCTCTGGTGATTGCTTACCTCATGTGGAGGGAAGGGCAGAGTTTTGATGATGCTTTTCAGTTTGTGAAGGCGGCGAGAGGTATTGCTGATCCGAATATGGGTTTTGCTTGCCAATTGTTACAGTGCCAGAAAAGGGTCCATGCATTCCCTCTTAGCCCTAGCTCTTTGTTGAGAATGTATAGAATTGCGCCACACTCACCGTATGATCCTTTGCATCTTGTCCCCAAAATGTTGACGGATCCTTCTCCATCTGCTATGGACTCCAGAGGTGCATTTATAGTACACATTCCTTCTGCAATATATGTTTGGATTGGTAAGAATTGTGAGGCCATCATGGAAAGGGATGCCAGAGGTGCTGTGGGTCAGATTGTACGCTATGAGAGAGTGCAAGGACATGTTATAATGATCAAGGAAGGTGAGGAACCAGCTTACTTTTGGGATGCTTTTTCAAAATTCTTGCCTTTGATGGATAAATCTGGTGATAAAGTAGAAAATAGCAAATCAAGTGTTAAGATTTGGCCTGGTGAGAGAAAAGTGGACTCATACGATGTTGATTTTGAAGTTTTCAAAAAAGCAATCACGGGAGGTTTTGTGCCTCCATTTGCATCATCAGAGGATGAACATGAAATCCATCTTCCCGCAAGAGAGGGTAGTTGGAGTTTTTTAAGGCGTAAAGTTTCCTCTGCTACTCTGAAGGAGTTTGTCTCAGCCCCTAAGTTATCCTTTCCAAGGGTTTATTCAGATTCCATGTTGTGTATTCGTACATCAGAAAATTCATCTCCATGCTCGTCACTTTTGTCATCATCATCTTCACCCTTATATGTCTCTCCAGATTCCATTTCTTCCGATTCCAGCACTCATTCAAAGTTGACAGAATTGTCCCCAGATTCATCCTCTGCAGTTTTGACTTCTATTCCGTTATCACATCCTCGGTCTCAGTCAACCTCTTTGCCATTGACAAAACCATCAACTTCCCTTGCTGAACGCAGAGGTAGTTTGTCAAAGTCTTTGAAGTTGCCAGTAATAAATGATAAGACACAAGTTATAGATAAACCATCGAATTTTCATGCTAGTCAAGAGTATGGTGTTCCTGTTAACGGCAATGTTAGCAATTTGCAACCATCAGATAATGAAGATTATTTTTGTGAGTCCAATGACCATGTCAAGGATAGAGGCATGAATTCAATTCAACAGTGTGAGCTAGCATCATGTCCTGGCATTTTTGATTGTGTGGATTACAAGGAGAGGAACTGTGTTGAGCCTTTGATAGATTGTTCCTCAAGAGAAGGCCTGAAGTCTACATCATCAAAAGGAATTAATGAGAGTGGCGTATTGCAATATAATCTGACGCAATCTTTAGTATATCACTGGCCCAGTTTAGAAAAGATTGAAACATTTGGCACAAGTCATCTGGATTCTAAAGCTGCTTTTGTCATATTCTCTCCAAGTATGCATGCACATGCAAGAAACATTTTATATTTTTGGGTAGGGAAGTCTTTCAATTGTGATGCTTCACAGGTTCGGTTAGATAGTGATAGAAAGTTAGATTTCATTGGAGCAGTTGACTGGAATCGAATTGGTTGTGATCTCCTTGCTCGGTTTAGTTTGCCAGAGAATACAGTTATCAAGATTGTTAAAGAGAATGAAGAACCGCGGGAGTTCCTTGCTTTGCTGAGTTCATTGTAG 2427 0.4326 MVGNDDARAKMFWRSASWSSSRSAAAANNNSNTSGEAEKDYAADRDSINGQNRRFPPPPLTPRSQQNCKARSCLPPLQPLSIARRSLDEWPKASSDDIGEWPQPPTTPGGGGRGNNNGERLKLDLSSIQQNHDNKNNNGGLVKRDKIAFFDKECSKVADHVYLGGDAVARDKDILKQNGITHVLNCVGFVCPEYFKNDFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQSGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQFVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRIAPHSPYDPLHLVPKMLTDPSPSAMDSRGAFIVHIPSAIYVWIGKNCEAIMERDARGAVGQIVRYERVQGHVIMIKEGEEPAYFWDAFSKFLPLMDKSGDKVENSKSSVKIWPGERKVDSYDVDFEVFKKAITGGFVPPFASSEDEHEIHLPAREGSWSFLRRKVSSATLKEFVSAPKLSFPRVYSDSMLCIRTSENSSPCSSLLSSSSSPLYVSPDSISSDSSTHSKLTELSPDSSSAVLTSIPLSHPRSQSTSLPLTKPSTSLAERRGSLSKSLKLPVINDKTQVIDKPSNFHASQEYGVPVNGNVSNLQPSDNEDYFCESNDHVKDRGMNSIQQCELASCPGIFDCVDYKERNCVEPLIDCSSREGLKSTSSKGINESGVLQYNLTQSLVYHWPSLEKIETFGTSHLDSKAAFVIFSPSMHAHARNILYFWVGKSFNCDASQVRLDSDRKLDFIGAVDWNRIGCDLLARFSLPENTVIKIVKENEEPREFLALLSSL 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3399g00034 808 Pfam Dual specificity phosphatase, catalytic domain 161 291 IPR000340 GO:0008138|GO:0016311
Gabi3399g00034 808 SUPERFAMILY Actin depolymerizing proteins 710 806 - -
Gabi3399g00034 808 Gene3D Severin 304 400 IPR029006 -
Gabi3399g00034 808 MobiDBLite consensus disorder prediction 88 120 - -
Gabi3399g00034 808 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 148 294 IPR029021 -
Gabi3399g00034 808 ProSiteProfiles Dual specificity protein phosphatase domain profile. 153 295 IPR020422 GO:0006470|GO:0008138
Gabi3399g00034 808 MobiDBLite consensus disorder prediction 13 75 - -
Gabi3399g00034 808 MobiDBLite consensus disorder prediction 504 578 - -
Gabi3399g00034 808 MobiDBLite consensus disorder prediction 14 37 - -
Gabi3399g00034 808 Gene3D Protein tyrosine phosphatase superfamily 126 295 IPR029021 -
Gabi3399g00034 808 SUPERFAMILY Actin depolymerizing proteins 300 402 - -
Gabi3399g00034 808 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 212 273 IPR000387 GO:0016311|GO:0016791
Gabi3399g00034 808 SMART dsp_5 153 292 IPR020422 GO:0006470|GO:0008138
Gabi3399g00034 808 ProSitePatterns Tyrosine specific protein phosphatases active site. 237 247 IPR016130 GO:0016311|GO:0016791
Gabi3399g00034 808 PANTHER MKPA PROTEIN 8 805 - -
Gabi3399g00034 808 CDD DSP 154 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3399g00034 Gabi-Chr3399 303124 310891 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3399g00034 2 189 Protein tyrosine phosphatase (PTP) family AT3G55270 61.257 2.92e-65 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3399g00034 - - vum:124838930 1180.62