Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3399g00012 ATGGATTCTTCTGCATTGACTTATCATTTCAATCGCTTCAGAACCTCCGCGAACTCGTTCCTATCCCAATATGAACCTCTCACTCTGCTTCTCGCTCCTCTTCTCTCTCTTCTTCTCGCACACGTCGTTCGCTCTTTGTTCCGGGTTCTCCATGACAAGGGACTCAAAGCCACACTCATAGGGTTTTTCATGACCTCTATCAAATTGATCCCTGCTGTTAAGAGTCGTATAGATGCTGAGAAACGGAAGGTTGTCAATAAGTTGCAGTCTGATAGCAAGTCTAAAAGAGAAGGTTGGATAACAGAATTGCCAAGTACAGGATTAGGGACATCTGTCCTTGAGAAAATGAGAGAGGAGAAAAGAAATGATCCGATTTGGCAAGGCAAATGCTCTGGTACAGTCTACATTGGAGGAAGTGAATCTGATGGACATTTTTCTCTGATAAATGAGGCATGCTCAATGTTTTCACATACCAATCCCTTGCATTTGGATGTATTCCAGAGTGTAGCACGCTTTGAGGCAGAAGTGGTTGCAATGACAGCAGCACTCCTTGGAAGTAAGGAAAAATGTTCTGGAGGACAAATATGCGGCAACATGACATCAGGAGGGACTGAAAGTATATTATTAGCCGTCAAATCATCTCGTGACTATATGAAATATAAGAAAGGAATTACAAGACCCGAAATGATAATTCCTGAGTCTGCTCACTCAGCATATGACAAGGCTGCACAGTATTTTAATATCAAACTATGGCGTGTTCCAGTTAGCAAATTTTTTCAAGCAGATGTAAAAGCAATTCGACGTCATATTAACAAAAATACCATTTTGATTGTTGGATCTGCTCCTGGGTATCCTCATGGAATAATTGACCCCATTGAAGAACTTGGTCATCTGGCATCAAGCTGTGGTGTTTGCTTCCATGTAGACCTTTGCCTTGGTGGCTTTGTATTACCTTTTGCTCGTGAGCTTGGGTACAACATTCCGCCATTTGATTTTTCTGTTAAAGGAGTTTCTTCAATATCAGTTGATGTGCATAAATATGGTTTAGCTCCCAAAGGAACAAGTGTTGTTCTTTATAGGAACCATGAAATCAGAAAGCTGATTACTAATGTATTTTCTTTCTGGCTTTTGGACTCTACAGCATCAATTTGTCGCTGTTACCGAGTGGTCTGGTGGGCTGTATGTATCTCCAACCATAGCTGGAAGCAGGCCTGGAGGACTTATTGCTGGTGCATGGGCTGCAATGGTGTCTCTAGGGAAAGAAGGTTACGTGGAAAATACAAAAGCAATTATGGAAGCATCAAAAAGAATACAAAAAGGTATAGAGGAGATTGCTGA 1338 0.4148 MDSSALTYHFNRFRTSANSFLSQYEPLTLLLAPLLSLLLAHVVRSLFRVLHDKGLKATLIGFFMTSIKLIPAVKSRIDAEKRKVVNKLQSDSKSKREGWITELPSTGLGTSVLEKMREEKRNDPIWQGKCSGTVYIGGSESDGHFSLINEACSMFSHTNPLHLDVFQSVARFEAEVVAMTAALLGSKEKCSGGQICGNMTSGGTESILLAVKSSRDYMKYKKGITRPEMIIPESAHSAYDKAAQYFNIKLWRVPVSKFFQADVKAIRRHINKNTILIVGSAPGYPHGIIDPIEELGHLASSCGVCFHVDLCLGGFVLPFARELGYNIPPFDFSVKGVSSISVDVHKYGLAPKGTSVVLYRNHEIRKLITNVFSFWLLDSTASICRCYRVVWWAVCISNHSWKQAWRTYCWCMGCNGVSRERRLRGKYKSNYGSIKKNTKRYRGDC 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3399g00012 445 Gene3D - 142 389 IPR015421 GO:0003824
Gabi3399g00012 445 PANTHER - 39 373 - -
Gabi3399g00012 445 SUPERFAMILY PLP-dependent transferases 92 367 IPR015424 -
Gabi3399g00012 445 FunFam sphingosine-1-phosphate lyase 1 141 382 - -
Gabi3399g00012 445 Pfam Pyridoxal-dependent decarboxylase conserved domain 169 365 IPR002129 GO:0016830|GO:0019752|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3399g00012 Gabi-Chr3399 97487 105728 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3399g00012 157 363 Calmodulin-binding Proteins AT5G17330 25.114 3.26e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3399g00012 K01634 - gmx:100794395 615.15