Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3399g00006 ATGAGAAGTTTTCAGTTTCACTGGACAGTTTTGACTTTGCTGATTTCAGTTTCTCATTTGCTATCTTGCTTGGGAAACAATGACATACCTGCCCAGTTGAATGATGATGTTCTTGGCCTGATTGTGTTTAAATCAGACCTTCATGACCCTTCTTCTTATCTTGCTTCATGGAATGAAGATGATGTCAATCCATGTTCATGGCAGTTTGTACGATGCAATCCTGAGAGTGGAAGAGTTTCAGAGGTCTCATTGGATGGTTTGGGGTTATCTGGGAAGATAGGAAGAGGTCTTGAGAAGTTGCAACATCTAACGGTATTGTCACTTTCTCATAACAACTTGAATGGGAGCATTAGTCCATCACTTACTCTTTCTAATAGTCTTGAAAGGCTTAACCTTAGTCACAATGGTCTTTCTGGTCCCATACCTACTTCTTTTGTGAATATGAGTTCAATAAGATTTCTTGATCTTTCAGAGAATTCATTCTCAGGAACAATCCCTGACAATTTTTTTCAGAGCTGTTTTTCCCTTCATCACCTTTCTTTAGCTCGGAATATGTTTGAAGGACCAGTCCCTAGCACACTATCTAGATGTTCCTCATTGAATAACCTCAATCTTTCCAATAATCGTTTCTCTGGTAATGTGGATTTTACTGGGATTTGGTCATTAAACAGGCTTAGGAATTTGGATCTTTCCAAAAATGCCTTCTCTGGGTATTTACCTAATGGAATTTCAGCCATACATAACTTGAAAGAGATCTTGTTCCAGGATAACCAGTTTTCAGGTCCATTACCTACTGATATTGGATTCTGTCTGCATTTGAATAGGTTGGATTTTAGTGATAATCAGTTCAGTGGAGAACTACCAGAATCACTTGGGAGGCTTAATTCTTTGAGCTATTTCAAGGCATCAAATAATCTTTTCAGTAGTGAATTGCCTCAATGGATTGGTAACATGACTAATCTGGAATACCTAGAGCTCTCAAACAACCAGTTCACTGGAAGCATCCCACAATCAATAGGGGAACTGAGATCACTGACTTATATGAGCATTTCAAACAACAAGCTTGTTGGAAATATTCCATTGTCATTGGTTTCCTGCACAAAGTTATCAGTGATCAGGCTCAGAGGTAATGGTTTCAATGGTACCATACCAGAGGGTTTGTTTGGCCTTGGATTGGAGGAAATAGACTTTTCCCACAATTATCTGATAGGTTCAATCCCATCAGGCTCAAGAAGGCTCTTAGAAACTCTCACCAATTTGGACCTTTCAGAGAACCATCTCCAGGGAAATATCCCTGCAGAAATGGGTCTTCTTTCAAAACTTAGATACTTGAATTTGTCTTGGAATGATCTTCATTCACAGATGCCACCAGAATTTGGTCTCCTTCAGAATCTAACAGTTTTAGATCTTCGTAACAGTGCCTTGTATGGTTCGGTTCCAGCAGATATATGTGATTCAGGCAATTTGGCCGTCCTTCAACTGGATGGAAATTCATTGAAGGGGTCCATTCCAGAAGAGATTGGGAATTGTACATCTCTCTATTTGCTGAGTTTGTCTCACAATAATTTGAGTGGTTCAATCCCAAAGTCCATGTCAAAGCTAAACAAGCTCAAAATACTCAAATTGGAATTCAATGAACTAAGTGGAGAGATACCAATGGAGCTTGGAATGCTTCAAAATCTTCTTGCAGTGAATATATCATATAACAGGCTCACAGGAAGGCTTCCTACTAGTAGTATATTTCAGAACTTGGACAAAAGTTCCTTGGAAGGAAACCTGGGTCTTTGCTCGCCCTTGCTGAAGGGTCCATGTAAGATGAATGTCCCCAAGCCCCTAGTGCTTGACCCAAATGTCTATAACAACCAAATGGGTCCTCAAAGGCAAAGAAATGAATCATCATCTAGCCAAATTCATCACCACAGGTTCCTTAGTGTTTCTGCTATTATTGCAATTTCTGCATCCTTTGTCATCATATTAGGTGTCATTGCTGTTAGCCTACTTAATGTTTCTGTAAGGAGAAGGCTATCATTTGTGGACAATGCTTTGGAAAGCATGTGTTCAAGCTCTTCTAGATCAGGAAGTCCAGCCACAGGAAAGCTTATTCTATTTGATTCCCATTACTCACCAGATTTGATCAGCAATCCAGAATCCCTTCTCAACAAGGCATCTGAGATTGGAGAAGGAGTTTTTGGAACAGTTTACAAAGTTACATTGGGATCACAAGGTGGAATGGTAGCAATCAAGAAGCTTATCATCTCAAACATAATCCAATATCCAGAAGACTTTGATAGGGAAGTTAGAATCCTAGGGAAAGCAAGGCACCCAAATCTAATAGCATTGAAAGGATACTACTGGACTCCACAACTACAGCTTTTAGTATCTGAGTATGCACCAAATGGTAACCTGCAAAGCAAGCTACATGATAGGCTTCCTTCAAGTCCTCCTCTTTCTTGGGCTAATAGGTTCAAAATTTTGCTTGGAACAGCAAAGGGTCTTGCCCATTTGCATCATTCATTCCGTCCACCAATCATTCACTACAACATAAAGCCAAGCAACATTTTACTTGATGAGAATTGCAACCCAAAGATCTCGGATTTCGGGTTAGCCCGGCTTCTGACAAAGCTGGACAGGCATGTGATGAGCAATAGGTTTCAGAGTGCATTAGGATATGTGGCACCAGAATTAACATGCCAGAGCTTAAGGGTCAATGAGAAATGTGATATATATGGTTTTGGGGTGATGATCCTTGAGCTAGTCACAGGTAGAAGGCCAGTGGAATATGGAGAAGACAATGTGCTGATACTAAATGACCATGTAAGGGTGTTGCTTGAGCATGGCAATGTGTTGGAATGTGTGGATCCAAGCATGAGTGAGTATCCAGAGGATGAGGTGTTACCAGTTCTGAAGCTAGCAATGGTATGCACCTCTCATATACCTTCAAGTAGGCCTACTATGGCAGAAGTGGTGCAAATACTCCAGGTTATTAAAACTCCAGTTCTTCAAAGGATGGAAGTGTTTTGA 3021 0.4035 MRSFQFHWTVLTLLISVSHLLSCLGNNDIPAQLNDDVLGLIVFKSDLHDPSSYLASWNEDDVNPCSWQFVRCNPESGRVSEVSLDGLGLSGKIGRGLEKLQHLTVLSLSHNNLNGSISPSLTLSNSLERLNLSHNGLSGPIPTSFVNMSSIRFLDLSENSFSGTIPDNFFQSCFSLHHLSLARNMFEGPVPSTLSRCSSLNNLNLSNNRFSGNVDFTGIWSLNRLRNLDLSKNAFSGYLPNGISAIHNLKEILFQDNQFSGPLPTDIGFCLHLNRLDFSDNQFSGELPESLGRLNSLSYFKASNNLFSSELPQWIGNMTNLEYLELSNNQFTGSIPQSIGELRSLTYMSISNNKLVGNIPLSLVSCTKLSVIRLRGNGFNGTIPEGLFGLGLEEIDFSHNYLIGSIPSGSRRLLETLTNLDLSENHLQGNIPAEMGLLSKLRYLNLSWNDLHSQMPPEFGLLQNLTVLDLRNSALYGSVPADICDSGNLAVLQLDGNSLKGSIPEEIGNCTSLYLLSLSHNNLSGSIPKSMSKLNKLKILKLEFNELSGEIPMELGMLQNLLAVNISYNRLTGRLPTSSIFQNLDKSSLEGNLGLCSPLLKGPCKMNVPKPLVLDPNVYNNQMGPQRQRNESSSSQIHHHRFLSVSAIIAISASFVIILGVIAVSLLNVSVRRRLSFVDNALESMCSSSSRSGSPATGKLILFDSHYSPDLISNPESLLNKASEIGEGVFGTVYKVTLGSQGGMVAIKKLIISNIIQYPEDFDREVRILGKARHPNLIALKGYYWTPQLQLLVSEYAPNGNLQSKLHDRLPSSPPLSWANRFKILLGTAKGLAHLHHSFRPPIIHYNIKPSNILLDENCNPKISDFGLARLLTKLDRHVMSNRFQSALGYVAPELTCQSLRVNEKCDIYGFGVMILELVTGRRPVEYGEDNVLILNDHVRVLLEHGNVLECVDPSMSEYPEDEVLPVLKLAMVCTSHIPSSRPTMAEVVQILQVIKTPVLQRMEVF 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3399g00006 1006 Gene3D Ribonuclease Inhibitor 342 610 IPR032675 -
Gabi3399g00006 1006 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 33 193 - -
Gabi3399g00006 1006 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Gabi3399g00006 1006 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 797 1001 - -
Gabi3399g00006 1006 Gene3D Ribonuclease Inhibitor 271 341 IPR032675 -
Gabi3399g00006 1006 Gene3D Ribonuclease Inhibitor 198 270 IPR032675 -
Gabi3399g00006 1006 ProSiteProfiles Protein kinase domain profile. 719 1000 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3399g00006 1006 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 194 288 - -
Gabi3399g00006 1006 Pfam Protein kinase domain 721 990 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3399g00006 1006 Gene3D Ribonuclease Inhibitor 36 193 IPR032675 -
Gabi3399g00006 1006 ProSitePatterns Protein kinases ATP-binding region signature. 725 749 IPR017441 GO:0005524
Gabi3399g00006 1006 Gene3D Phosphorylase Kinase; domain 1 719 800 - -
Gabi3399g00006 1006 Gene3D Transferase(Phosphotransferase) domain 1 801 1003 - -
Gabi3399g00006 1006 SUPERFAMILY L domain-like 319 589 - -
Gabi3399g00006 1006 CDD STKc_IRAK 725 993 - -
Gabi3399g00006 1006 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 713 796 - -
Gabi3399g00006 1006 Pfam Leucine Rich Repeat 440 454 IPR001611 GO:0005515
Gabi3399g00006 1006 PANTHER LEUCINE RICH REPEAT KINASE 2 79 169 - -
Gabi3399g00006 1006 ProSiteProfiles Leucine-rich repeat profile. 102 124 IPR001611 GO:0005515
Gabi3399g00006 1006 SMART LRR_typ_2 318 342 IPR003591 -
Gabi3399g00006 1006 SMART LRR_typ_2 222 245 IPR003591 -
Gabi3399g00006 1006 SMART LRR_typ_2 462 486 IPR003591 -
Gabi3399g00006 1006 SMART LRR_typ_2 100 125 IPR003591 -
Gabi3399g00006 1006 SMART LRR_typ_2 438 461 IPR003591 -
Gabi3399g00006 1006 SMART LRR_typ_2 558 583 IPR003591 -
Gabi3399g00006 1006 SMART LRR_typ_2 148 172 IPR003591 -
Gabi3399g00006 1006 Pfam Leucine rich repeat 312 355 IPR001611 GO:0005515
Gabi3399g00006 1006 Pfam Leucine rich repeat 488 547 IPR001611 GO:0005515
Gabi3399g00006 1006 Pfam Leucine rich repeat 102 160 IPR001611 GO:0005515
Gabi3399g00006 1006 SUPERFAMILY L domain-like 50 387 - -
Gabi3399g00006 1006 FunFam Inactive leucine-rich repeat receptor-like protein kinase 314 607 - -
Gabi3399g00006 1006 SUPERFAMILY Protein kinase-like (PK-like) 721 998 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3399g00006 Gabi-Chr3399 38607 41924 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3399g00006 11 1003 Receptor kinase-like Gene Family AT3G28040 63.908 0.0 1248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Gabi3399g00006 Pkinase 5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3399g00006 - - gmx:100795810 1759.58