Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3398g00061 ATGGCGAGGTACCGAAGCCGGAGCAGAAGCTACAGCCCTCGCCGGCGAAGCCCAAGCCCACCGCGTGTGCGGAAGCGCCACGATGATCGCCACCGTGATAGCAGGTCCTACAGAGACCGCCGCTCCCCTGGTCCTTCTGGCTTGCTTGTTCGCAATCTTCCACTCGATGCTAGACCCGAAGATCTTAGGCTCCCTTTCCAGCGCTATGGCCCCATCAAGGACGTTTATCTTCCCAGAAATTACTACACTGGTGAGCCTCGGGGCTTTGGGTTTGTGAAATTTCGATATGCTGAAGATGCAGCAGAAGCTAAGCAACAACTTAATTACACTGTCATTGGTGGACGAGAAATAAGAATTGTGTATGCTGAAGAAAATAGGAAAACTCCTCAAGAAATGCGTGTAACTTCTCGTGGAAGTGATCGACCTGGAGGAAGCGGTAGAAGGAGGACTCCTACAAGATCTCCTAGACGCCAATATCATTCCTACTCTCGGTCTCCATCACCAGCTAGGGATGATTCAAGGCTGGTTTACATAATAAATCTTGATGATGATGATTGTACTGTTTCCTTGCTGGGTTAG 579 0.5009 MARYRSRSRSYSPRRRSPSPPRVRKRHDDRHRDSRSYRDRRSPGPSGLLVRNLPLDARPEDLRLPFQRYGPIKDVYLPRNYYTGEPRGFGFVKFRYAEDAAEAKQQLNYTVIGGREIRIVYAEENRKTPQEMRVTSRGSDRPGGSGRRRTPTRSPRRQYHSYSRSPSPARDDSRLVYIINLDDDDCTVSLLG 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3398g00061 192 MobiDBLite consensus disorder prediction 22 40 - -
Gabi3398g00061 192 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 42 166 - -
Gabi3398g00061 192 MobiDBLite consensus disorder prediction 1 52 - -
Gabi3398g00061 192 Gene3D - 19 165 IPR012677 -
Gabi3398g00061 192 SUPERFAMILY RNA-binding domain, RBD 40 150 IPR035979 GO:0003676
Gabi3398g00061 192 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 124 IPR000504 GO:0003723
Gabi3398g00061 192 FunFam Serine/arginine-rich SC35-like splicing factor SCL28 2 138 - -
Gabi3398g00061 192 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 118 IPR000504 GO:0003723
Gabi3398g00061 192 SMART rrm1_1 47 120 IPR000504 GO:0003723
Gabi3398g00061 192 ProSitePatterns Protamine P1 signature. 2 12 IPR000221 GO:0000786|GO:0003677|GO:0005634|GO:0007283|GO:0035092
Gabi3398g00061 192 MobiDBLite consensus disorder prediction 124 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3398g00061 Gabi-Chr3398 524546 527342 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3398g00061 38 133 Eukaryotic Initiation Factors Gene Family AT1G22760 30.612 1.59e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3398g00061 K12900 - qsa:O6P43_003493 224.172