Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3398g00059 ATGGCGAGGTACCGAAGCCGGAGCAGAAGCTACAGCCCTCGCCGGCGAAGCCCAAGCCCACCGCGTGTGCGGAAGCGCCACGATGATCGCCACCGTGATAGCAGGTCCTACAGAGACCGCCGCTCCCCTGGTCCTTCTGGCTTGCTTGTTCGCAATCTTCCACTCGATGCTAGACCCGAAGATCTTAGGCTCCCTTTCCAGCGCTATGGCCCCATCAAGGACGTTTATCTTCCCAGAAATTACTACACTGGTGAGCCTCGGGGCTTTGGGTTTGTGAAATTTCGATATGCTGAAGATGCAGCAGAAGCTAAGCAACAACTTAATTACACTGTCATTGGTGGACGAGAAATAAGAATTGTGTATGCTGAAGAAAATAGGAAAACTCCTCAAGAAATGCGTGTAACTTCTCGTGGAAGTGATCGACCTGGAGGAAGCGGTAGAAGGAGGACTCCTACAAGATCTCCTAGACGCCAATATCATTCCTACTCTCGGTCTCCATCACCAGCTAGGGATGATTCAAGGAATGTCAGGGGTAGTGATGCGTATAATTCTCCTGAGCGATCAAGATCTTATTCTAGGTCTCCCTCTCCTCGTGGTGGTAAGGATTATAGTTCTCCAAGTCCCAGAGAGAATGGTTGGAGCCCCAAGGACAGGGGGAATCATACACCTTACAGATCAGAAACCCCTAAGGGTTAA 696 0.5057 MARYRSRSRSYSPRRRSPSPPRVRKRHDDRHRDSRSYRDRRSPGPSGLLVRNLPLDARPEDLRLPFQRYGPIKDVYLPRNYYTGEPRGFGFVKFRYAEDAAEAKQQLNYTVIGGREIRIVYAEENRKTPQEMRVTSRGSDRPGGSGRRRTPTRSPRRQYHSYSRSPSPARDDSRNVRGSDAYNSPERSRSYSRSPSPRGGKDYSSPSPRENGWSPKDRGNHTPYRSETPKG 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3398g00059 231 Gene3D - 2 137 IPR012677 -
Gabi3398g00059 231 MobiDBLite consensus disorder prediction 1 52 - -
Gabi3398g00059 231 MobiDBLite consensus disorder prediction 123 231 - -
Gabi3398g00059 231 SUPERFAMILY RNA-binding domain, RBD 40 150 IPR035979 GO:0003676
Gabi3398g00059 231 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 41 225 - -
Gabi3398g00059 231 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 124 IPR000504 GO:0003723
Gabi3398g00059 231 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 118 IPR000504 GO:0003723
Gabi3398g00059 231 SMART rrm1_1 47 120 IPR000504 GO:0003723
Gabi3398g00059 231 ProSitePatterns Protamine P1 signature. 2 12 IPR000221 GO:0000786|GO:0003677|GO:0005634|GO:0007283|GO:0035092
Gabi3398g00059 231 MobiDBLite consensus disorder prediction 214 231 - -
Gabi3398g00059 231 MobiDBLite consensus disorder prediction 22 40 - -
Gabi3398g00059 231 MobiDBLite consensus disorder prediction 178 211 - -
Gabi3398g00059 231 FunFam Serine/arginine-rich SC35-like splicing factor SCL28 2 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3398g00059 Gabi-Chr3398 523567 527342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3398g00059 38 133 Eukaryotic Initiation Factors Gene Family AT1G22760 30.612 5.34e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3398g00059 K12900 - gmx:100788749 279.641