Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3398g00056 ATGCAAGCAGCTCAAGCATCAGCCACAGATGAAGCACCTGAGATTTCCCATCAGATTGATCCCCAGCTAAACAAAGAAGTTTCAGATAGTCGAGTCAGCGGGAGGCGTCCAGATATTTCACTTCAAGTTCCACCAAGACCTTTAGGGTTTGGCAGCACTTCTGGTGGAAAGGTTTTGGACCATTCTCAAAGTTTCTCTAAAGGGATCTCATCATCGAGAGGCTTCTTGCGGGCCTTGAGCTTCAAAAGAAAAGGAAATGTGGCAGATGGCGAAAGAAGCTGCCTCCTTAATTCAGATCCCAAGACAGCTGCAGACTGTCCTAATATGGCCTCCATATCTGAAACTGCATGGAAAAGATGTACTTCTCTTCCTGTTACACCTGCATCTAATATATCCACTTCAGTTTCTACACCCGTTTCTGCAAGGGCATATAATGAACAGACTAAGCCACATAAAGATGTTGTTCGTTCCAAGGTTTCAAGATCCCTTTCTATACCTGGACGAAATGTTGTCATTGTAAGATCTGTCTCTTTTTCTGCCCGTAATGAACAGGAACAACAAGATCCAGACGATGATCAAATAACTCCTGTGCCAGTTGAAGATGCTGCCGATGAAGAAATTCCTGAAGAGGAAGCGGTGTGCAGGATATGTCTTGATGTGTGTGATGAAAGAAATACCTTTAAAATGGAATGCAGTTGCAAAGGTGACCTGAGATTGGTGCATGAAGAATGTGCAATTAAATGGTTTAGCACAAAAGGAAACAGGAAATGTGATGTATGTCAGCAAGAGGTTCAGAATTTACCAGTAACTTTGCTTCGTGTATCCAGCTCTGTTCAACGACAAGGCAGACAGTTGCAGGGTCAACAGAACCTACAACCAGAGTCAATAAGCGCCTGGCAAGACTTTGTGGTGCTTGTCCTGATAAGCACAATATGCTATTTTTTCTTCCTTGAACAGCTGCTGCTTCCCGATATGAAGACTCAAGCCATCATTATAGCAGCACCATTTGCCTTTACCTTGGGCCTTCTGGCATCTATTTTTGCAGTCATCCTTGCAATTAGAGAGTATATATGGACATATGCTGCTCTTGAGTTTGCTCTTGTGGCTTTAACTGTGCATCTGTTTTATACTATGTTGCGTTTGACGGCCATTTATGCAATACTACTTTCATCAGTTTTGGGTTTTGGAATTGCTATGGGAATCAACTATGTATATATCCAGTATGTCACTTGGAGACTTCAGGTCTCTCATAATGATAGCCCAGTATGA 1269 0.4263 MQAAQASATDEAPEISHQIDPQLNKEVSDSRVSGRRPDISLQVPPRPLGFGSTSGGKVLDHSQSFSKGISSSRGFLRALSFKRKGNVADGERSCLLNSDPKTAADCPNMASISETAWKRCTSLPVTPASNISTSVSTPVSARAYNEQTKPHKDVVRSKVSRSLSIPGRNVVIVRSVSFSARNEQEQQDPDDDQITPVPVEDAADEEIPEEEAVCRICLDVCDERNTFKMECSCKGDLRLVHEECAIKWFSTKGNRKCDVCQQEVQNLPVTLLRVSSSVQRQGRQLQGQQNLQPESISAWQDFVVLVLISTICYFFFLEQLLLPDMKTQAIIIAAPFAFTLGLLASIFAVILAIREYIWTYAALEFALVALTVHLFYTMLRLTAIYAILLSSVLGFGIAMGINYVYIQYVTWRLQVSHNDSPV 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3398g00056 422 SMART ringv_2 213 261 IPR011016 GO:0008270
Gabi3398g00056 422 PANTHER OS02G0165000 PROTEIN 35 418 - -
Gabi3398g00056 422 ProSiteProfiles Zinc finger RING-CH-type profile. 206 267 IPR011016 GO:0008270
Gabi3398g00056 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 269 IPR013083 -
Gabi3398g00056 422 MobiDBLite consensus disorder prediction 1 57 - -
Gabi3398g00056 422 SUPERFAMILY RING/U-box 210 264 - -
Gabi3398g00056 422 Pfam RING-variant domain 214 260 IPR011016 GO:0008270
Gabi3398g00056 422 CDD RING_CH-C4HC3_MARCH 214 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3398g00056 Gabi-Chr3398 496989 502319 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3398g00056 190 321 C3H Transcription Factor Family AT2G37950 29.577 7.18e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3398g00056 - - gmx:100527094 702.205