Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3398g00052 ATGAACCAGTATCACATATACGAAGCAATTGGTCGCGGCAAATACTCCACCGTGTACAAAGGCAGGAAGAAGAAGACCATTGAGTATTTTGCAGTCAAAAGCGTCGATAAATCGCAGAAAACCAAGGTTCTTCAAGAAGTTAGGATTCTTCACGCTTTAGATCACGTAAATGTGCTGAAGTTTTATTCTTGGTATGAAACTTCCGCTCATCTATGGTTGGTTTTGGAGTATTGTGTTGGAGGGGATCTGCTTTCCATATTACGGCAGGATAGTCAACTTCCTGAAGATTCAGTTCATGATCTTGTTTTCGACCTAGTCAAAGCTTTGCAGTTTTTGCATTCAAATGGAATAATTTATTGTGACCTGAAACCATCAAATATCCTACTAGATGAAAATGGATGTGCAAAGCTATGTGATTTCGGATTGGCTAGAAAGTTGAAAGATATATCAAAGACTCCTTCTTCCTCGTTGCCTCAAGCAAAGCGGGGAACACCCTCTTACATGGCTCCGGAGCTTTTTGAGGATGGTGGAGTCCATTCTTATGCTTCTGATTTCTGGGCCCTAGGTTGTGTACTATATGAATGTTATGCTGGAAGGCCTCCCTTTGTGGGAAGAGAATTCACTCAGCTTGTAAAATCCATAATGTCAGATCCGACTCCACCTCTTCCCGGTAATCCAAGTCGACCTTTTGTCAATTTAATTAATTCTCTTTTAGTAAAAGATCCATCTGAAAGAATACAGTGGCCTGAGCTTTGTGGACATGCCTTTTGGAGAACCAAAATTTCTCTGGTGCCTCTGCCTGCTCAACCTGCATTTGATGATATGATAGAGCTACATGCTAGACCATGCTTGTCAGAACGTAATGGAGATAAATCTTCTCATAACAGGACCCCTCCTAAATATCGTGAAAAGGATGTGAAAGGGGTGTTGAAGAAAGATGAAAATTCTGTTTTAGGATCTAGGGGCATTGAGACACCAAATAGGGTAACACCAATTGGCCACAGAACTCAGACAAAGGGTTCTGGCAGAACAATTGAGGCGAAGCAGAAAGATCATTCCAATATTAGCAAGGGTGTGAATCTTTTGAGACTGTCAAGAATAGCAAAATCAAATTTACAGAAAGAAAATGAGAAGGAAAACTATCGACGCCCCATGCCTAATGCCTCTGAGAATGATTCTGAAGTTAGAATTGAAAACACTGACATGGAACTTGATTTTGATGAGAATACTGAAGATGATGCGCATGAAGAAACTGATGGCTCTGAACATCCAACTTCCGTGCCTGATGAGAAAATGGACAATCAGGGAAAAGCAGAGGAGATTGAAAATAATATACACCAGTTAGACACCCCATCTGTTGTTAACACTCCTGTCTCAGATGAACCAAGGGCATTTGATCATGAGTCAACTCCTGACCGTCCTGACATATCTGCTATTTCTCCCAGTGTGAGCCCTCAGGTGAAGAAGCATAGAGCTAAAGAAGACTCAGGATCTGGCCTCGACTCTGATTCTTCAAAGTCATCTAACAACCTTTCCCAGGTTCTTTGGCATCCATCTGATCTCTCTGTTAGACCTGTAATGCCCAGCAGAAAAGTTGATAAAATCTCAGAAGTCATTCCTTCACTTCCTTTTGAGGCTTTGCAAGCGTCTGATTTTGTCAAGATGCCTAAAGAGCAATTGGAGGCAGTTCAGAACCGAATTATAGCCATTTTGAACGGCAATACCACCATTGGAGAGAAACAGAATGTGATTAGGTACCTTGAGATGTTGAGCAGTAATGCTGATGCAGCCAATATCTTGACCAATGGACCAATAATGCTCATTCTTGTAAAATTGCTACGTCAATCAAAGGCATCTGCTTTGCGTGTTCAACTTGCTTCACTGATCGGTCTGTTGATTAGGCACTCTACTTTTGTTGACGACAGTTTGGCTAATTCTGGAATTTTAGGCTCACTGACCGAAGGCCTTAGAGACAAGCAAGAAAAAGTGAGGAGGTTTTCCATGGCTGCATTGGGTGAGTTGCTATTTTATATATCAACTCAAGCTGCGGACTGCAGGGATAACAATCAACTCGAGTCTCCATCAAAGGACAATAGGACTCCGCATGGCTGGCAGGTTACAAATTCATTAATATCATTGGTGTCATCAATATTGAGGAAGGGCGAGGATGATATAACTCAATTGTATGCGTTGAGAACAATTGAGAATATTTGCAGTCAAGGAGGGTTCTGGGTGGGACGTTTGACCGGTCAAGATGTTATTAGTAATCTCTGCTATATCTATAGGGCGGCAGGGAAACAAGAGAGCATGAGGCTTACTGCAGGGTCATGTTTGGTGCGCTTAGTTCGTTTTAATCCTCCTAGTAGTCAGTCGGTTATAGAGAAACTCTCTTTCAAGGACCTAGCTTCCGCTCTCGTCAAGGGCAGTCCACGGGAGCAGCAAATCAGCTTAAATCTTCTTAACATGGCAATGCTTGGAAGTCACATGTTCACAAATATTGGAAGATATCTTCTACCACTTGCGGAAGATAAGAATCTGATCCCGAGTCTTTTGGCTCTTGTTGAGCAGGGTAGTGAAGTTTTAAAAGGAAAGGCGCTTGTCTTTGTGGCTCTCCTATGTAAGCATGGTAGGAGGTGGCTTCCACACTTCTTTTGTAGCCAAAAGTTACTTTCTGTGGTGGACAGGCTAGGAAAAGAGAAGGATGCCTATGTGCGGCAGTGTTTAGATGCATTTGTGCATATTGTGGCATCTACTATTCCGGGTTTACTGGATATAATAACAGGAGATATCCAGCAAATGATGGGAGGAAGGCGCCATGGACATATCTCCGCCCTCACCAGTAGATCTGCTCCAAAAACCAACATTCATTTATTTCCTGTTGTCCTTCATCTTCTTGGAAGTTCAACTTTTAAGCACAAAGTGGTGACACCTCAAGTCCTGCGGCAGTTCGCGAATCTAATTAAACTCCTGGAGACACCGTTTCAGGGAAGAGATGACTTCCAAATAACCCATCTTCGAATTTTGGAGTCTCTCACGGAGGAATCTCCTGTGATTCTTGGCAATCCTGACATTTTCATACGTGAAATCCTCCCTAGTTTGACAGTTCTCTATAAGGGGAACAAGGATGGTGATGGCAGATTTTTGTGCCTTAAAATTTTTTTCGATGTGATGATTATTCTTTTGAGTGAACCAATTGAACAAGAGCAAAGATTGAAGGATCTGAAACTCATATCAAATACCCGTTTTCTTCCTCTCTACCCGACCTTGATCGAAGATGAAGATCCTATTCCTATCTATGCACAGAAGCTTCTTGTCATGCTACTGGAGTTCAGTTTTATTACAATTCCAGACATTCTACATCTGAAGACAATTTCACAATGCTTCGAGTTCTTGCTTGGTGATCTGTCAAATGCAAATGTGAATAATGTTAAGCTGTGTCTTGCTCTGGCTTCCGCGCCGGAAATGGAGTCCAAATTACTCTCTCAATTAAAAGTGGTTAGGAGGATTGGCAACTTTCTTGAGTTCGTATATGCAAAGGGTATGGAAGATTTGCTGGAACCAACTCTTGGGCTGTGTAGGGCTTTTCTAGCACGTTCAGTCAGCTGTGCAAAAGGCTTCAGCTACACATCAGAACCAACTCTCTTAGGTGAATGTCCTTCTGAGGTGAGTGGTGCTGTTGATCCCCAGCAATGCATAAGAGATATAACAGACTTTGGAAGCAATGTTGGTGTCTTGCTAGAGTTGAGTGCCTCTACAGAAACCAATATTGCTGATATAGCTTCTGAATGTGTTGTTTTACTTCTCAAGGCAGCTCCTAGAGAAGCCACCACTGGTCTCCTAACCAATCTCCCCAAGGTCAGTGTGATCCTAGAGTCCTGGAATAGAGGCACCCCTCACTTAATGGTACAGCGAATGCTTCATGCTTTAGGTTATGCTTGCAAGCAGTACTTATTGAATGCAATGATATTATCAATATCCATACCAGAGATTTCGAGAATTGAAGTGATAGTTTCTGAACTCAAAAGTTCAGGTGTGCCTGGTTTAGCCAAAACTGCTGGGCTTGCAGCCATGGAATTGCAGCGGCTGCCTCGCTGCATTTGA 4101 0.4248 MNQYHIYEAIGRGKYSTVYKGRKKKTIEYFAVKSVDKSQKTKVLQEVRILHALDHVNVLKFYSWYETSAHLWLVLEYCVGGDLLSILRQDSQLPEDSVHDLVFDLVKALQFLHSNGIIYCDLKPSNILLDENGCAKLCDFGLARKLKDISKTPSSSLPQAKRGTPSYMAPELFEDGGVHSYASDFWALGCVLYECYAGRPPFVGREFTQLVKSIMSDPTPPLPGNPSRPFVNLINSLLVKDPSERIQWPELCGHAFWRTKISLVPLPAQPAFDDMIELHARPCLSERNGDKSSHNRTPPKYREKDVKGVLKKDENSVLGSRGIETPNRVTPIGHRTQTKGSGRTIEAKQKDHSNISKGVNLLRLSRIAKSNLQKENEKENYRRPMPNASENDSEVRIENTDMELDFDENTEDDAHEETDGSEHPTSVPDEKMDNQGKAEEIENNIHQLDTPSVVNTPVSDEPRAFDHESTPDRPDISAISPSVSPQVKKHRAKEDSGSGLDSDSSKSSNNLSQVLWHPSDLSVRPVMPSRKVDKISEVIPSLPFEALQASDFVKMPKEQLEAVQNRIIAILNGNTTIGEKQNVIRYLEMLSSNADAANILTNGPIMLILVKLLRQSKASALRVQLASLIGLLIRHSTFVDDSLANSGILGSLTEGLRDKQEKVRRFSMAALGELLFYISTQAADCRDNNQLESPSKDNRTPHGWQVTNSLISLVSSILRKGEDDITQLYALRTIENICSQGGFWVGRLTGQDVISNLCYIYRAAGKQESMRLTAGSCLVRLVRFNPPSSQSVIEKLSFKDLASALVKGSPREQQISLNLLNMAMLGSHMFTNIGRYLLPLAEDKNLIPSLLALVEQGSEVLKGKALVFVALLCKHGRRWLPHFFCSQKLLSVVDRLGKEKDAYVRQCLDAFVHIVASTIPGLLDIITGDIQQMMGGRRHGHISALTSRSAPKTNIHLFPVVLHLLGSSTFKHKVVTPQVLRQFANLIKLLETPFQGRDDFQITHLRILESLTEESPVILGNPDIFIREILPSLTVLYKGNKDGDGRFLCLKIFFDVMIILLSEPIEQEQRLKDLKLISNTRFLPLYPTLIEDEDPIPIYAQKLLVMLLEFSFITIPDILHLKTISQCFEFLLGDLSNANVNNVKLCLALASAPEMESKLLSQLKVVRRIGNFLEFVYAKGMEDLLEPTLGLCRAFLARSVSCAKGFSYTSEPTLLGECPSEVSGAVDPQQCIRDITDFGSNVGVLLELSASTETNIADIASECVVLLLKAAPREATTGLLTNLPKVSVILESWNRGTPHLMVQRMLHALGYACKQYLLNAMILSISIPEISRIEVIVSELKSSGVPGLAKTAGLAAMELQRLPRCI 1366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3398g00052 1366 PANTHER SERINE/THREONINE-KINASE ULK4-LIKE PROTEIN-RELATED 1 1363 IPR044591 GO:0000911|GO:0000914|GO:0008017
Gabi3398g00052 1366 ProSiteProfiles Protein kinase domain profile. 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3398g00052 1366 Pfam Protein kinase domain 4 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3398g00052 1366 MobiDBLite consensus disorder prediction 410 511 - -
Gabi3398g00052 1366 Gene3D - 553 913 IPR011989 -
Gabi3398g00052 1366 MobiDBLite consensus disorder prediction 416 444 - -
Gabi3398g00052 1366 SMART serkin_6 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3398g00052 1366 CDD STKc_ULK4 3 257 - -
Gabi3398g00052 1366 Gene3D Transferase(Phosphotransferase) domain 1 1 301 - -
Gabi3398g00052 1366 MobiDBLite consensus disorder prediction 370 385 - -
Gabi3398g00052 1366 MobiDBLite consensus disorder prediction 370 397 - -
Gabi3398g00052 1366 SUPERFAMILY ARM repeat 567 916 IPR016024 -
Gabi3398g00052 1366 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Gabi3398g00052 1366 MobiDBLite consensus disorder prediction 284 306 - -
Gabi3398g00052 1366 SUPERFAMILY Protein kinase-like (PK-like) 1 258 IPR011009 -
Gabi3398g00052 1366 FunFam Aurora kinase A 1 81 - -
Gabi3398g00052 1366 MobiDBLite consensus disorder prediction 319 354 - -
Gabi3398g00052 1366 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3398g00052 Gabi-Chr3398 459157 466046 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3398g00052 1 267 AGC Kinase Gene Family AT1G45160 32.039 1.67e-36 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK ULK_ULK4 Gabi3398g00052 Pkinase 5.5e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3398g00052 K17545 - gmx:100817590 2454.86