Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3398g00043 ATGGCTATAATGAGGAGTATAATGAGATCGAGGTCGCAAAGGGTGGTGCAGGAGGAGGAGGTGGTGGTGTTCGACGACGGCTTAAGGCAGAGTTGTTGGGCCAACATGCCCCACGAGCTCCTCCGTGAGGTCCTCATCCGAATCGAGGCGTCGGAGGCCACGTGGCCGCCGCGGAAGAGCGTCGTCGCCTGTGCCGGAGTGTGCCGGAGCTGGAGACAAATTACCAAGGACATCGTCAAGACCCCCGAACTTTCCTCTAAGATAACCTTCCCCATCTCTGTTAAGCAGCCTGGCCCAAAGGAGCATCTCCTCCAGTGTTTTATAAAGCGTGATCGATCCACCCAAACATATCATTTGTTTCTCAGTTTAAGTAGTACGCTAGCTGATGAAGGGAAGTTCCTTTTGGCTGCACGCAAATGTAGACGTTCCACCTGCACAGATTATATCATCTCTCTAGATGCAGATGATATTTCAAGGGGAAGCAACACCTATGTTGGGAAACTGAGATCAAATTTTCTGGGAACCAAGTTCACAATCTATGATGGCCAGCCACCTCATGCAGGGGCAAAGATTACAAAAAGTCGCTCCACTAGGCTGGTGAACCTAAAACAAGTCTCGCCCAAGATCCCTACAGGAAACTATCCAGTGGCCCACATCTCATATGAATTGAATGTGCTAGGCTCCAGGGGGCCTAGGCGAATGCATTGTGTGATGGATTCCATTCCTGTCTCAGCAATTGAAACAGGAGGGGTAGCCCCTACACAGACCGAGTTTTCTTTTAACAACGTAGATATGTTTCCTTCATTCCCTTTTTTTCGATCAAAATCAAATCGTGTGGAAAACCCCCCCTCCGGACCCCTGGGCGATCAAAAGGATGGGATGCTAGTGTTGAAAAACAAGGCTCCAAGGTGGCATGAGCAGCTGCAGTGTTGGTGCTTAAACTTTCATGGACGGGTGACAATTGCCTCAGTTAAAAACTTTCAGTTGGTGGCATCCCCAGAAAATGGACCTTCTGGACCAGAACATGATAAGATTATCCTCCAATTCGGAAAAGTTGGGAAGGATTTGTTTACAATGGACTACCGGTACCCTATCTCGGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTTGATACAAAGATTGCTTGTGAATGA 1158 0.4853 MAIMRSIMRSRSQRVVQEEEVVVFDDGLRQSCWANMPHELLREVLIRIEASEATWPPRKSVVACAGVCRSWRQITKDIVKTPELSSKITFPISVKQPGPKEHLLQCFIKRDRSTQTYHLFLSLSSTLADEGKFLLAARKCRRSTCTDYIISLDADDISRGSNTYVGKLRSNFLGTKFTIYDGQPPHAGAKITKSRSTRLVNLKQVSPKIPTGNYPVAHISYELNVLGSRGPRRMHCVMDSIPVSAIETGGVAPTQTEFSFNNVDMFPSFPFFRSKSNRVENPPSGPLGDQKDGMLVLKNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGPSGPEHDKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3398g00043 385 ProSitePatterns Tub family signature 1. 315 328 IPR018066 -
Gabi3398g00043 385 Pfam Tub family 94 380 IPR000007 -
Gabi3398g00043 385 ProSitePatterns Tub family signature 2. 370 385 IPR018066 -
Gabi3398g00043 385 CDD F-box_AtTLP-like 33 77 - -
Gabi3398g00043 385 FunFam Tubby-like F-box protein 90 385 - -
Gabi3398g00043 385 SUPERFAMILY F-box domain 27 77 IPR036047 GO:0005515
Gabi3398g00043 385 SUPERFAMILY Tubby C-terminal domain-like 82 385 IPR025659 -
Gabi3398g00043 385 PRINTS Tubby superfamily signature 148 164 IPR000007 -
Gabi3398g00043 385 PRINTS Tubby superfamily signature 297 314 IPR000007 -
Gabi3398g00043 385 PRINTS Tubby superfamily signature 164 188 IPR000007 -
Gabi3398g00043 385 PRINTS Tubby superfamily signature 363 385 IPR000007 -
Gabi3398g00043 385 PRINTS Tubby superfamily signature 315 331 IPR000007 -
Gabi3398g00043 385 PRINTS Tubby superfamily signature 213 240 IPR000007 -
Gabi3398g00043 385 PRINTS Tubby superfamily signature 342 361 IPR000007 -
Gabi3398g00043 385 Pfam F-box domain 33 80 IPR001810 GO:0005515
Gabi3398g00043 385 Gene3D Tubby Protein; Chain A 90 385 IPR025659 -
Gabi3398g00043 385 Gene3D - 27 86 - -
Gabi3398g00043 385 PANTHER TUBBY-RELATED 13 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3398g00043 Gabi-Chr3398 417941 421916 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3398g00043 9 385 TUB Transcription Factor Family AT2G47900 73.684 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gabi3398g00043 Tub 7.9e-114 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3398g00043 K19600 - gmx:100778346 678.322