Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3398g00042 ATGGCTATAATGAGGAGTATAATGAGATCGAGGTCGCAAAGGGTGGTGCAGGAGGAGGAGGTGGTGGTGTTCGACGACGGCTTAAGGCAGAGTTGTTGGGCCAACATGCCCCACGAGCTCCTCCGTGAGGTCCTCATCCGAATCGAGGCGTCGGAGGCCACGTGGCCGCCGCGGAAGAGCGTCGTCGCCTGTGCCGGAGTGTGCCGGAGCTGGAGACAAATTACCAAGGACATCGTCAAGACCCCCGAACTTTCCTCTAAGATAACCTTCCCCATCTCTGTTAAGCAGCCTGGCCCAAAGGAGCATCTCCTCCAGTGTTTTATAAAGCGTGATCGATCCACCCAAACATATCATTTGTTTCTCAGTTTAAGTACGCTAGCTGATGAAGGGAAGTTCCTTTTGGCTGCACGCAAATGTAGACGTTCCACCTGCACAGATTATATCATCTCTCTAGATGCAGATGATATTTCAAGGGGAAGCAACACCTATGTTGGGAAACTGAGATCAAATTTTCTGGGAACCAAGTTCACAATCTATGATGGCCAGCCACCTCATGCAGGGGCAAAGATTACAAAAAGTCGCTCCACTAGGCTGGTGAACCTAAAACAAGTCTCGCCCAAGATCCCTACAGGAAACTATCCAGTGGCCCACATCTCATATGAATTGAATGTGCTAGGCTCCAGGGGGCCTAGGCGAATGCATTGTGTGATGGATTCCATTCCTGTCTCAGCAATTGAAACAGGAGGGGTAGCCCCTACACAGACCGAGTTTTCTTTTAACAACGTAGATATGTTTCCTTCATTCCCTTTTTTTCGATCAAAATCAAATCGTGTGGAAAACCCCCCCTCCGGACCCCTGGGCGATCAAAAGGATGGGATGCTAGTGTTGAAAAACAAGGCTCCAAGGTGGCATGAGCAGCTGCAGTGTTGGTGCTTAAACTTTCATGGACGGGTGACAATTGCCTCAGTTAAAAACTTTCAGTTGGTGGCATCCCCAGAAAATGGACCTTCTGGACCAGAACATGATAAGATTATCCTCCAATTCGGAAAAGTTGGGAAGGATTTGTTTACAATGGACTACCGGTACCCTATCTCGGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTTGATACAAAGATTGCTTGTGAATGA 1155 0.4857 MAIMRSIMRSRSQRVVQEEEVVVFDDGLRQSCWANMPHELLREVLIRIEASEATWPPRKSVVACAGVCRSWRQITKDIVKTPELSSKITFPISVKQPGPKEHLLQCFIKRDRSTQTYHLFLSLSTLADEGKFLLAARKCRRSTCTDYIISLDADDISRGSNTYVGKLRSNFLGTKFTIYDGQPPHAGAKITKSRSTRLVNLKQVSPKIPTGNYPVAHISYELNVLGSRGPRRMHCVMDSIPVSAIETGGVAPTQTEFSFNNVDMFPSFPFFRSKSNRVENPPSGPLGDQKDGMLVLKNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGPSGPEHDKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3398g00042 384 PRINTS Tubby superfamily signature 314 330 IPR000007 -
Gabi3398g00042 384 PRINTS Tubby superfamily signature 341 360 IPR000007 -
Gabi3398g00042 384 PRINTS Tubby superfamily signature 147 163 IPR000007 -
Gabi3398g00042 384 PRINTS Tubby superfamily signature 163 187 IPR000007 -
Gabi3398g00042 384 PRINTS Tubby superfamily signature 212 239 IPR000007 -
Gabi3398g00042 384 PRINTS Tubby superfamily signature 362 384 IPR000007 -
Gabi3398g00042 384 PRINTS Tubby superfamily signature 296 313 IPR000007 -
Gabi3398g00042 384 ProSitePatterns Tub family signature 2. 369 384 IPR018066 -
Gabi3398g00042 384 FunFam Tubby-like F-box protein 90 384 - -
Gabi3398g00042 384 Gene3D Tubby Protein; Chain A 90 384 IPR025659 -
Gabi3398g00042 384 CDD F-box_AtTLP-like 33 77 - -
Gabi3398g00042 384 SUPERFAMILY F-box domain 27 77 IPR036047 GO:0005515
Gabi3398g00042 384 PANTHER TUBBY-RELATED 13 382 - -
Gabi3398g00042 384 ProSitePatterns Tub family signature 1. 314 327 IPR018066 -
Gabi3398g00042 384 Pfam F-box domain 33 80 IPR001810 GO:0005515
Gabi3398g00042 384 SUPERFAMILY Tubby C-terminal domain-like 82 384 IPR025659 -
Gabi3398g00042 384 Gene3D - 27 86 - -
Gabi3398g00042 384 Pfam Tub family 94 379 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3398g00042 Gabi-Chr3398 417940 421916 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3398g00042 9 384 TUB Transcription Factor Family AT2G47900 73.684 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gabi3398g00042 Tub 6.1e-114 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3398g00042 K19600 - gmx:100778346 673.315