Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3398g00038 ATGGGGTGTGTGTTTGGGAAAGAGTCATCGGCGGAGGAGAGGAGAGAGGAAGTGAGAGAAGGAAAAGCAGAGGTTGGTGGAGGAGAGATTCAGAATGAGAAGGAAGGTGGAGGAGAAGAGAAGAGGACAAGGCCAAGGGGAGAGAGGAGGAGATCTTCTAAGCCGAATCCGAGGTTGAGCAATCCACCTAACAATGTTCATGGTGAGCAGGTAGCTGCAGGGTGGCCATCTTGGCTCTCCAAGGTTGCTGGGGAAGCTATCAATGGATTGACCCCTAGAAGGGCTGATACTTTTGAGAAACTTGATAAGATTGGGCAAGGTACATACAGCAATGTTTACAAAGCTAGGGATATGTTAACGGGGAAAATTGTTGCCTTAAAGAAGGTCCGTTTTGACAATTTAGAGCCCGAGAGTGTGAAGTTTATGGCCAGAGAGATTCTGATTCTGCGTCGTCTGGATCATCCCAATGTTGTCAAACTGGAAGGCTTAGTGACTTCTAGAATGTCATGCAGTTTATATCTTGTGTTTGAATACATGGTGCATGATCTGGCTGGACTGGCTACAAACCCAGCAATTAAGTTCACAGAGCCTCAGGTAAAATGTTACATGCATCAGCTATTTTCTGGGCTTGAACATTGTCACAACCGTCATGTGCTGCATCGTGATATAAAGGGGTCAAACCTTCTTATTGACAATGAAGGAATCCTTAAGATTGCTGATTTTGGATTAGCGTCCTTCTTTGATCCTGATCACAAGCACCCTATGACTAGTAGAGTGGTGACTTTATGGTATCGACCTCCAGAACTTCTTCTTGGGGCCACTGACTATGGTGTAGGAGTGGACCTCTGGAGTGCTGGCTGCATTCTTGCAGAATTATTGGCTGGAAAGCCTATTATGCCTGGTCGAACGGAGGTGGAGCAGCTACATAAGATATTTAAGCTATGTGGTTCCCCTTCTGAAGAATATTGGAAAAAGTCAAAGTTGCCACATGCTACTATTTTTAAGCCCCAACAGTCATACAAGCGATGCATAGCAGACACTTTTAAAGATTTTCCACCATCATCCCTGCCGCTAATTGAGACCCTTCTCTCAATCGATCCGGCTGAACGGCTGACTGCCACTGCTGCATTGCATAGTGAATTCTTTACAACAAAACCGTATGCTTGTGAGCCCTCTAGCCTTCCAAAATATCCTCCGAGCAAGGAGATGGATGCGAAGCTACGGGATGAAGAGGCTAGAAGATTGAGAGCAGCTGGCAAAGCTAATGCTGATGGTGTCAAGAAATCTCGTCAACGTGAGCGCATTGGGAGGGGAATTCCAGTTCCAGAGGCCAATGCTGAACTGCAAGCAAATATTGATAGACGGCGACTGATCACACATGCAAATGCTAAGAGCAAGAGTGAGAAGTTTCCTCCTCCCCACCAAGATGGAACTCTAGGCTATCCTTTGGGTTCTTCACATCACATGGATCCAGCTTTTGATCCTCCTGATGTTCCATTCAGTTCCACAAACTTCTCACAACCTAAAGCAAATATTCAAACCTGGTCTGGCCCATTGGTAGATCCTGCTGGTGTGGCTGTACCAAGGAGAAGAAGAAACATGGCAGGTGATGGGTATATACAATCAAAGTCATCAAAGGAGGACTCAAAAAGATAA 1656 0.4577 MGCVFGKESSAEERREEVREGKAEVGGGEIQNEKEGGGEEKRTRPRGERRRSSKPNPRLSNPPNNVHGEQVAAGWPSWLSKVAGEAINGLTPRRADTFEKLDKIGQGTYSNVYKARDMLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMVHDLAGLATNPAIKFTEPQVKCYMHQLFSGLEHCHNRHVLHRDIKGSNLLIDNEGILKIADFGLASFFDPDHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQSYKRCIADTFKDFPPSSLPLIETLLSIDPAERLTATAALHSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGKANADGVKKSRQRERIGRGIPVPEANAELQANIDRRRLITHANAKSKSEKFPPPHQDGTLGYPLGSSHHMDPAFDPPDVPFSSTNFSQPKANIQTWSGPLVDPAGVAVPRRRRNMAGDGYIQSKSSKEDSKR 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3398g00038 551 FunFam probable serine/threonine-protein kinase At1g54610 181 422 - -
Gabi3398g00038 551 ProSiteProfiles Protein kinase domain profile. 98 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3398g00038 551 MobiDBLite consensus disorder prediction 499 514 - -
Gabi3398g00038 551 Gene3D Transferase(Phosphotransferase) domain 1 181 421 - -
Gabi3398g00038 551 MobiDBLite consensus disorder prediction 8 55 - -
Gabi3398g00038 551 SMART serkin_6 98 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3398g00038 551 Gene3D Phosphorylase Kinase; domain 1 86 180 - -
Gabi3398g00038 551 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Gabi3398g00038 551 PANTHER CELL DIVISION PROTEIN KINASE 96 386 - -
Gabi3398g00038 551 ProSitePatterns Protein kinases ATP-binding region signature. 104 127 IPR017441 GO:0005524
Gabi3398g00038 551 SUPERFAMILY Protein kinase-like (PK-like) 93 387 IPR011009 -
Gabi3398g00038 551 FunFam probable serine/threonine-protein kinase At1g54610 85 180 - -
Gabi3398g00038 551 MobiDBLite consensus disorder prediction 462 551 - -
Gabi3398g00038 551 MobiDBLite consensus disorder prediction 1 70 - -
Gabi3398g00038 551 CDD STKc_CDK9_like 98 382 - -
Gabi3398g00038 551 Pfam Protein kinase domain 98 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3398g00038 Gabi-Chr3398 397398 403561 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3398g00038 93 420 Core Cell Cycle Gene Families AT5G10270 52.326 8.07e-119 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gabi3398g00038 Pkinase 2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3398g00038 K08819 - qsa:O6P43_003509 974.541