LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3398g00028	ATGGGTGGGTGTTTTCCTTGTTTTGAATCATCCAACAAAGAGGACAATAGTGGGGTGAAGGAAGTGAACAAGAAGGATTCTTTTAAAGATGATTCTGTTCCTCAGTCTCATCACTCTAGCAGGGTTAGCTCAGATAAATCAAAATCACAAAATGGCTCAGATCCTAAGAAGGAAACACCAATTCCAAAGGATGGCACAACAGCCCATATTGCTGCACAAACATTTACGTTCCGAGAGCTTGCAGCTGCTACAAAGAATTTTAGGCCAGAATGTTTATTAGGCGAAGGAGGTTTTGGACGTGTTTACAAAGGTCGCCTCGAGAGCACAGGACAAGTAGTTGCTGTAAAACAGCTTGACCGAAATGGCCTTCAAGGAAATCGAGAGTTTTTGGTGGAAGTTCTCATGCTCAGCCTCTTACATCACCCCAATCTTGTGAACTTAATTGGTTATTGTGCTGATGGTGATCAGCGACTGCTTGTTTATGAATTTATGCCGTTGGGATCTTTGGAGGATCATTTACATGATCTTCCTCCTGACAAGGAGCCTTTGGACTGGAACACTAGGATGAAAATAGCGGCTGGTGCAGCAAAGGGATTGGAATATTTGCATGACAAGGCAAATCCCCCTGTGATATATAGAGACTTAAAATCATCCAACATCCTCCTAGATGAGGGTTATCATCCCAAGTTATCAGATTTTGGGCTGGCAAAACTTGGTCCGGTTGGTGACAAAACTCATGTATCAACACGAGTAATGGGAACATATGGCTATTGTGCCCCGGAATATGCTATGACTGGTCAACTAACTCTGAAATCAGATGTCTACAGTTTTGGAGTTGTCTTCCTTGAACTCATTACCGGGCGCAAGGCCATTGATAATACACGTGCGCATGGAGAGCATAATCTCGTTGCATGGGCACGGCCTCTTTTTAAAGACCGTAGGAAGTTTCCGAAAATGGCTGACCCTCTACTTCAAGGCCGTTATCCAATGAGAGGACTGTACCAAGCACTCGCAGTTGCAGCAATGTGTTTGCAGGAACAAGCTGCTACAAGGCCTCTTATTGGGGATGTTGTGACTGCTCTTACATATCTGGCTTCCCAGACATATGATCCAAATGCACCGAGTCAGTCTAACAGGATTGGTCCATCTACTCCAAGGAGCAGGGATGACAGAAGGAGCATGGCAGATGGTGTGGATAGCCCGGACCGTGGACGGCTTGGCTCTCCTTCCACCCACAGAAACTCACCTGATTTCAGGAAGAGAGACAGTAGGGATCCAAGTGGGGTGACAGAGTTAGGAAGGATTGACACTGGTGGTGGGTCAGGGAGAAAATGGGGATTGGATGATTTAGAAAGGCAGGAATCTCAGAGAGACAGCCCTGTAAATACTGGAAGAGCTAGAGAGACTCCAAGGAACCGCGACCTGGACAGAGAACGCGCAGTTGCAGAAGCAAAAGTATGGGGTGAGAATTGGAGAGAGAAGAAAAGAGCAAATGCCATGGGGAGCTTTGATGCTACAAATGAGTGA	1527	0.4597	MGGCFPCFESSNKEDNSGVKEVNKKDSFKDDSVPQSHHSSRVSSDKSKSQNGSDPKKETPIPKDGTTAHIAAQTFTFRELAAATKNFRPECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRAHGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAPSQSNRIGPSTPRSRDDRRSMADGVDSPDRGRLGSPSTHRNSPDFRKRDSRDPSGVTELGRIDTGGGSGRKWGLDDLERQESQRDSPVNTGRARETPRNRDLDRERAVAEAKVWGENWREKKRANAMGSFDATNE	508

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3398g00028	508	MobiDBLite	consensus disorder prediction	14	63	-	-
	Gabi3398g00028	508	Pfam	Protein kinase domain	92	301	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3398g00028	508	MobiDBLite	consensus disorder prediction	384	399	-	-
	Gabi3398g00028	508	MobiDBLite	consensus disorder prediction	368	383	-	-
	Gabi3398g00028	508	MobiDBLite	consensus disorder prediction	414	429	-	-
	Gabi3398g00028	508	PANTHER	OS07G0668900 PROTEIN	4	373	-	-
	Gabi3398g00028	508	SMART	serkin_6	87	364	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3398g00028	508	Gene3D	Phosphorylase Kinase; domain 1	59	163	-	-
	Gabi3398g00028	508	MobiDBLite	consensus disorder prediction	368	479	-	-
	Gabi3398g00028	508	ProSitePatterns	Protein kinases ATP-binding region signature.	93	116	IPR017441	GO:0005524
	Gabi3398g00028	508	SUPERFAMILY	Protein kinase-like (PK-like)	73	383	IPR011009	-
	Gabi3398g00028	508	CDD	STKc_IRAK	93	362	-	-
	Gabi3398g00028	508	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	210	222	IPR008271	GO:0004672\|GO:0006468
	Gabi3398g00028	508	Gene3D	Transferase(Phosphotransferase) domain 1	164	379	-	-
	Gabi3398g00028	508	FunFam	Serine/threonine-protein kinase PBS1	164	379	-	-
	Gabi3398g00028	508	ProSiteProfiles	Protein kinase domain profile.	87	364	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3398g00028	508	MobiDBLite	consensus disorder prediction	1	65	-	-
	Gabi3398g00028	508	FunFam	Serine/threonine-protein kinase PBS1	60	163	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3398g00028	Gabi-Chr3398	323828	331039	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3398g00028	4	405	Glycoside Hydrolase	AT3G07070	61.314	3.10e-171	487

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-1	Gabi3398g00028		Pkinase	5.7e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3398g00028	-		-	gmx:100814575	944.495