Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3398g00021 ATGTCCACCTCTAGAACCTCAAATGCTTCCCTCAAAGGATATGAACCAAATCAAACCCAAATGAATTTATCTCTTCTTCAACTCAATACATCTCCTTCTGGTGAGAGAAAAGGCCAAAGAAAACAAGCAGAGCCAGGAAGGTTTCTTGGGGTAAGGAGGCGCCCTTGGGGTCGATATGCTGCTGAAATTAGAGACCCTACAACTAAAGAAAGACATTGGCTTGGAACATTTGACACTGCTCAAGAAGCTGCTCTTGCTTATGACAAAGCTGCTTTGTCCATGAAAGGCAACCAAGCAAGAACCAACTTCATATACTCTGATGATACCAATTTTCATAACGTTCTTACTCCTAAAGATGTTCAAGCTCTCTTACCAGCTTCACAGTTCCTCACTAACACTCAGAAACCACAACCAACCAATCAAAATAGCCTCTCTCAGCTTGGTTCTTCCCACATTGAAAACCCCTCTCACTTGAACAATGACATGTGTTCTGAAACTGCACATGGGTCACCTCAGGATGATAATTTCTTCTTCTCCAATGATTCTAACTCAGGCTATCTGGAATGCATAGTTCCTGATAATTGTTTCAGACCTGTTTCCACTACCAACAGTTCAAGCAGCAGGAAGAGCAATGCAAGTGCTTCAAGCTATCACCAAAAGGTTAGCTCCATTAACACAAGCACCATGGAGGGTCAATCACATTTTGACAACACTGCATTCTCTCAAGAAGCCTTAAACATGCAAACAATGGCCTTTAACTTTGCAGATTTTTCTTACCCAAGTGAACTTAGTCAAGGATTATGGGGTAATCAACAATCATGGGATTGCAATTCCAGTGAACTGTCAGCTATGTTTAACAATCCATTAAGGATTGAAGATGGGTGCATGGATGCATCATGTCCCATCAATGACAGTCCAAGCTATGGGCTAATGACTCAGGCTGTTTCTTCAACTACATGTTCTCCATCACTTCCTCCTTTTGAGGATGCATGTTGA 996 0.4187 MSTSRTSNASLKGYEPNQTQMNLSLLQLNTSPSGERKGQRKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDKAALSMKGNQARTNFIYSDDTNFHNVLTPKDVQALLPASQFLTNTQKPQPTNQNSLSQLGSSHIENPSHLNNDMCSETAHGSPQDDNFFFSNDSNSGYLECIVPDNCFRPVSTTNSSSSRKSNASASSYHQKVSSINTSTMEGQSHFDNTAFSQEALNMQTMAFNFADFSYPSELSQGLWGNQQSWDCNSSELSAMFNNPLRIEDGCMDASCPINDSPSYGLMTQAVSSTTCSPSLPPFEDAC 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3398g00021 331 FunFam Ethylene-responsive transcription factor 2 47 105 - -
Gabi3398g00021 331 MobiDBLite consensus disorder prediction 1 36 - -
Gabi3398g00021 331 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Gabi3398g00021 331 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Gabi3398g00021 331 MobiDBLite consensus disorder prediction 1 49 - -
Gabi3398g00021 331 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
Gabi3398g00021 331 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Gabi3398g00021 331 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700|GO:0006355
Gabi3398g00021 331 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Gabi3398g00021 331 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Gabi3398g00021 331 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 33 225 - -
Gabi3398g00021 331 Pfam AP2 domain 50 96 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3398g00021 Gabi-Chr3398 238398 239393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3398g00021 1 284 AP2-EREBP Transcription Factor Family AT5G18560 39.420 1.98e-57 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi3398g00021 AP2 2.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3398g00021 - - gmx:100812047 425.246