Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3398g00020 ATGGAGCAGTACGGCCGGTCCAGTGAAGGCTCGCGGTCTGATCCGTCGGCGGAATGGACCGGAGCAGGGGGAGAAACCGGACTCGAAGAGCCTATGTGGCAATTGGGATTGGGTGCTGGCGAGGAATCGTATCCGCAACGGCCCGATGAGAATGATTGTGCCTACTATTTGAGGACCGGGTTCTGTGGCTTTGGCTCGCGGTGTCGGTTTAACCATCCCCTTGATCGTGGCGCGGTTATTGGAGCTGCGAGGACTGGAGGGGAGTTTCCAGAACGAGTAGGCCAGCCTGTGTGCCAGTATTATATGAGGACAGGATCATGCAAATTTGGTGCTTCTTGCAAGTATCACCACCCTAGGCAGGCAGGAGGCACTGCTGCCCCTGTCTCACTAAATTATTATGGATATCCGTTGCGACCGGGTGAAAAGGAGTGTTCCTATTATGTGAAAACGGGGCAATGCAAGTTTGGCGCAACTTGTAAATTCCATCATCCACAGCCTGCTGGCAGCCAAATTCCAGCACCATCGCCAGTTCCCCCAGTTTCGCCTTTACCTGTACCATTACCTTCACCATTATATCCAACCGTACAGTCTCCATCTGGTCCTTCATCACAGCAATTTGGTGTTCTGGTTGCAAGGCCACCTCTGCTACCTGGGTCATTAGTCCAGAGCCCCTATGGGCCTGTGGTATTGTCCCCTGCCATGGTCCCTTTTTCTGGCTGGGGTCCTTATCAGGCTCCTGGAACAGGCCCTGTCCTTCCTTCTAGTACTCCATCTGATGTTGGTTCGGCACAGCTTTATGGGATATCCCAGCTGCCCTCATCAGCAGCTGCCTATACTGGACCTTATCAACCTTCTGGTTTCTCAGCTGGTCCTTCAGGCAGTATTCAGAGGGAGCAGTCATTTCCAGAGAGGCCTAATCAACCAGAATGTCAGTATTACTTGAAAACAGGGGAGTGTAAATTTGGTCCATCATGTAGGTATCACCATCCACCAGACATGAGTGCTCCAAAAGGGAATGGGGAACGACTTTGCACTCATTATGCACAGCGTGGAGTATGTAAGTTCGGTCCTGCTTGCAAATTTGATCATCCTATGGGATCTCTGAGTTATTGTCCATCTGCTTCTTCACTGGCTGACATGCCGGTTGCACCCTATCCTGTGGGTTCATCAATTGGCACTCTTGCTCTGTCATCTTCATCATCAGAATTGCGGCCCGAACTTATGTCAGGATCTAGCATGGAGTCTGTCTCATCCAGAATATCCTCATCAATTGGCTTGACTTTGTCGACTGGTGGATCTGTTTCTCAATCAAGCACTCAACCATCTGCTCAGAGTTCCAGTCCTTCAGCAGCGGCCATTACCACCACAAATAGCAATGTCTCTCACACCTAG 1392 0.5093 MEQYGRSSEGSRSDPSAEWTGAGGETGLEEPMWQLGLGAGEESYPQRPDENDCAYYLRTGFCGFGSRCRFNHPLDRGAVIGAARTGGEFPERVGQPVCQYYMRTGSCKFGASCKYHHPRQAGGTAAPVSLNYYGYPLRPGEKECSYYVKTGQCKFGATCKFHHPQPAGSQIPAPSPVPPVSPLPVPLPSPLYPTVQSPSGPSSQQFGVLVARPPLLPGSLVQSPYGPVVLSPAMVPFSGWGPYQAPGTGPVLPSSTPSDVGSAQLYGISQLPSSAAAYTGPYQPSGFSAGPSGSIQREQSFPERPNQPECQYYLKTGECKFGPSCRYHHPPDMSAPKGNGERLCTHYAQRGVCKFGPACKFDHPMGSLSYCPSASSLADMPVAPYPVGSSIGTLALSSSSSELRPELMSGSSMESVSSRISSSIGLTLSTGGSVSQSSTQPSAQSSSPSAAAITTTNSNVSHT 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3398g00020 463 SUPERFAMILY CCCH zinc finger 308 332 IPR036855 GO:0046872
Gabi3398g00020 463 SUPERFAMILY CCCH zinc finger 140 166 IPR036855 GO:0046872
Gabi3398g00020 463 MobiDBLite consensus disorder prediction 1 15 - -
Gabi3398g00020 463 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 307 331 IPR000571 GO:0046872
Gabi3398g00020 463 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 73 IPR000571 GO:0046872
Gabi3398g00020 463 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 340 365 IPR000571 GO:0046872
Gabi3398g00020 463 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Gabi3398g00020 463 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 165 IPR000571 GO:0046872
Gabi3398g00020 463 SUPERFAMILY CCCH zinc finger 49 75 IPR036855 GO:0046872
Gabi3398g00020 463 ProSiteProfiles Zinc finger C3H1-type profile. 338 366 IPR000571 GO:0046872
Gabi3398g00020 463 Gene3D - 293 367 - -
Gabi3398g00020 463 FunFam Zinc finger nuclease 2 46 123 - -
Gabi3398g00020 463 SUPERFAMILY CCCH zinc finger 341 368 IPR036855 GO:0046872
Gabi3398g00020 463 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Gabi3398g00020 463 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Gabi3398g00020 463 SMART c3hfinal6 338 365 IPR000571 GO:0046872
Gabi3398g00020 463 SMART c3hfinal6 138 165 IPR000571 GO:0046872
Gabi3398g00020 463 SMART c3hfinal6 304 331 IPR000571 GO:0046872
Gabi3398g00020 463 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Gabi3398g00020 463 MobiDBLite consensus disorder prediction 287 307 - -
Gabi3398g00020 463 Gene3D - 45 123 - -
Gabi3398g00020 463 Gene3D - 124 171 - -
Gabi3398g00020 463 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Gabi3398g00020 463 MobiDBLite consensus disorder prediction 1 31 - -
Gabi3398g00020 463 SUPERFAMILY CCCH zinc finger 95 120 IPR036855 GO:0046872
Gabi3398g00020 463 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872
Gabi3398g00020 463 MobiDBLite consensus disorder prediction 425 463 - -
Gabi3398g00020 463 PANTHER PROTEIN PHOSPHATASE RELATED 29 400 - -
Gabi3398g00020 463 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872
Gabi3398g00020 463 MobiDBLite consensus disorder prediction 287 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3398g00020 Gabi-Chr3398 224632 235828 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3398g00020 1 462 C2H2 Transcription Factor Family AT5G18550 54.115 1.12e-152 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi3398g00020 zf-CCCH 1.6e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3398g00020 - - gmx:100789405 643.654