Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3398g00019 ATGGAGCAGTACGGCCGGTCCAGTGAAGGCTCGCGGTCTGATCCGTCGGCGGAATGGACCGGAGCAGGGGGAGAAACCGGACTCGAAGAGCCTATGTGGCAATTGGGATTGGGTGCTGGCGAGGAATCGTATCCGCAACGGCCCGATGAGAATGATTGTGCCTACTATTTGAGGACCGGGTTCTGTGGCTTTGGCTCGCGGTGTCGGTTTAACCATCCCCTTGATCGTGGCGCGGTTATTGGAGCTGCGAGGACTGGAGGGGAGTTTCCAGAACGAGTAGGCCAGCCTGTGTGCCAGTATTATATGAGGACAGGATCATGCAAATTTGGTGCTTCTTGCAAGTATCACCACCCTAGGCAGGCAGGAGGCACTGCTGCCCCTGTCTCACTAAATTATTATGGATATCCGTTGCGACCGGGTGAAAAGGAGTGTTCCTATTATGTGAAAACGGGGCAATGCAAGTTTGGCGCAACTTGTAAATTCCATCATCCACAGCCTGCTGGCAGCCAAATTCCAGCACCATCGCCAGTTCCCCCAGTTTCGCCTTTACCTGTACCATTACCTTCACCATTATATCCAACCGTACAGTCTCCATCTGGTCCTTCATCACAGCAATTTGGTGTTCTGGTTGCAAGGCCACCTCTGCTACCTGGGTCATTAGTCCAGAGCCCCTATGGGCCTGTGGTATTGTCCCCTGCCATGGTCCCTTTTTCTGGCTGGGGTCCTTATCAGGCTCCTGGAACAGGCCCTGTCCTTCCTTCTAGTACTCCATCTGATGTTGGTTCGGCACAGCTTTATGGGATATCCCAGCTGCCCTCATCAGCAGCTGCCTATACTGGACCTTATCAACCTTCTGGTTTCTCAGCTGGTCCTTCAGGCAGTATTCAGAGGGAGCAGTCATTTCCAGAGAGGCCTAATCAACCAGAATGTCAGTATTACTTGAAAACAGGGGAGTGTAAATTTGGTCCATCATGTAGGTATCACCATCCACCAGACATGAGTGCTCCAAAAGGGAATGTGATCCTTAGTCCTGCAGGTCTTCCTTTGCGACCGGGGGAACGACTTTGCACTCATTATGCACAGCGTGGAGTATGTAAGTTCGGTCCTGCTTGCAAATTTGATCATCCTATGGGATCTCTGAGTTATTGTCCATCTGCTTCTTCACTGGCTGACATGCCGGTTGCACCCTATCCTGTGGGTTCATCAATTGGCACTCTTGCTCTGTCATCTTCATCATCAGAATTGCGGCCCGAACTTATGTCAGGATCTAGCATGGAGTCTGTCTCATCCAGAATATCCTCATCAATTGGCTTGACTTTGTCGACTGGTGGATCTGTTTCTCAATCAAGCACTCAACCATCTGCTCAGAGTTCCAGTCCTTCAGCAGCGGCCATTACCACCACAAATAGCAATGTCTCTCACACCTAG 1428 0.5105 MEQYGRSSEGSRSDPSAEWTGAGGETGLEEPMWQLGLGAGEESYPQRPDENDCAYYLRTGFCGFGSRCRFNHPLDRGAVIGAARTGGEFPERVGQPVCQYYMRTGSCKFGASCKYHHPRQAGGTAAPVSLNYYGYPLRPGEKECSYYVKTGQCKFGATCKFHHPQPAGSQIPAPSPVPPVSPLPVPLPSPLYPTVQSPSGPSSQQFGVLVARPPLLPGSLVQSPYGPVVLSPAMVPFSGWGPYQAPGTGPVLPSSTPSDVGSAQLYGISQLPSSAAAYTGPYQPSGFSAGPSGSIQREQSFPERPNQPECQYYLKTGECKFGPSCRYHHPPDMSAPKGNVILSPAGLPLRPGERLCTHYAQRGVCKFGPACKFDHPMGSLSYCPSASSLADMPVAPYPVGSSIGTLALSSSSSELRPELMSGSSMESVSSRISSSIGLTLSTGGSVSQSSTQPSAQSSSPSAAAITTTNSNVSHT 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3398g00019 475 Gene3D - 45 123 - -
Gabi3398g00019 475 MobiDBLite consensus disorder prediction 1 15 - -
Gabi3398g00019 475 SUPERFAMILY CCCH zinc finger 95 120 IPR036855 GO:0046872
Gabi3398g00019 475 FunFam Zinc finger nuclease 2 46 123 - -
Gabi3398g00019 475 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Gabi3398g00019 475 Gene3D - 293 379 - -
Gabi3398g00019 475 MobiDBLite consensus disorder prediction 287 307 - -
Gabi3398g00019 475 PANTHER PROTEIN PHOSPHATASE RELATED 29 410 - -
Gabi3398g00019 475 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Gabi3398g00019 475 MobiDBLite consensus disorder prediction 1 31 - -
Gabi3398g00019 475 SUPERFAMILY CCCH zinc finger 352 380 IPR036855 GO:0046872
Gabi3398g00019 475 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Gabi3398g00019 475 SMART c3hfinal6 138 165 IPR000571 GO:0046872
Gabi3398g00019 475 SMART c3hfinal6 304 331 IPR000571 GO:0046872
Gabi3398g00019 475 SMART c3hfinal6 350 377 IPR000571 GO:0046872
Gabi3398g00019 475 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Gabi3398g00019 475 SUPERFAMILY CCCH zinc finger 308 332 IPR036855 GO:0046872
Gabi3398g00019 475 ProSiteProfiles Zinc finger C3H1-type profile. 350 378 IPR000571 GO:0046872
Gabi3398g00019 475 Gene3D - 124 171 - -
Gabi3398g00019 475 SUPERFAMILY CCCH zinc finger 140 166 IPR036855 GO:0046872
Gabi3398g00019 475 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 352 377 IPR000571 GO:0046872
Gabi3398g00019 475 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 307 331 IPR000571 GO:0046872
Gabi3398g00019 475 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 73 IPR000571 GO:0046872
Gabi3398g00019 475 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Gabi3398g00019 475 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 165 IPR000571 GO:0046872
Gabi3398g00019 475 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872
Gabi3398g00019 475 SUPERFAMILY CCCH zinc finger 49 75 IPR036855 GO:0046872
Gabi3398g00019 475 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872
Gabi3398g00019 475 MobiDBLite consensus disorder prediction 287 306 - -
Gabi3398g00019 475 MobiDBLite consensus disorder prediction 437 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3398g00019 Gabi-Chr3398 224632 235828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3398g00019 1 474 C2H2 Transcription Factor Family AT5G18550 55.647 1.06e-159 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi3398g00019 zf-CCCH 9.4e-09 CL0537