Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3398g00018 ATGAAGCTCTGGGCAACCAACGAGGTTCGCGCCAAGTCCAAGTTCTGGTACTTCCTGAGGAAACTGAAGAAGGTTAAGAAGAGCAATGGACAAGTCCTTGCTATTAATGAGATTTTTGAGAAGAACCCAACCAAGATTAATAACTATGGGATATGGTTGCGGTATCAGAGTAGGACCGGCTATCACAACATGTATAAGGAGTACCGTGATACCACTCTAAATGGTGCAGTGGAGCATATGTATAATGAGATGGCTTCTCGTCACAGGGTCCGGTTCCCTTGCATTCAAATTATTAAGACTGCTACCATCCCAGCCAAGCTTTGCAAAAGGGAGAGCACCAAACAATTTCACAACTCCAAGATCAAGTTCCCATTGGTTTTCCAGAAAATTAGGCCACCATCAAGGAAGCTGAAGACCACATACAAGGCCAAAAAGCCCAACTTGTTTATGTAA 453 0.4371 MKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEHMYNEMASRHRVRFPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFQKIRPPSRKLKTTYKAKKPNLFM 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3398g00018 150 Hamap 50S ribosomal protein L18Ae [rpl18a]. 1 41 IPR028877 -
Gabi3398g00018 150 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 1 100 IPR023573 GO:0003735|GO:0005840|GO:0006412
Gabi3398g00018 150 Gene3D - 1 43 - -
Gabi3398g00018 150 Gene3D - 44 119 - -
Gabi3398g00018 150 FunFam 60S ribosomal protein L18a 44 119 - -
Gabi3398g00018 150 PIRSF Ribosomal_L18a 1 150 IPR021138 GO:0003735|GO:0005840|GO:0006412
Gabi3398g00018 150 PANTHER 60S RIBOSOMAL PROTEIN L18A 1 149 IPR028877 -
Gabi3398g00018 150 SUPERFAMILY RplX-like 43 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3398g00018 Gabi-Chr3398 211242 213269 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3398g00018 1 150 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 92.667 3.74e-104 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3398g00018 K02882 K22683 jre:108990266 303.138