Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3398g00010 ATGTCACTTTCTTGTGCCAAAAACATCTTCCAGAGGTTCGGGGTAGATGAATTCCACATGGGAAGTTTTGTCCATAGCAGCTTTTTATCCAATGATCCTCTGCCATCTCTTGGAGCCCGAATGAACCAGGAAACTAAACTACAAAGATACATAATCTCCCCTTTCAATCCTCGATATAGGGCCTGGGAGATGTTACTGGTTGTTCTAGTCATATACTCAGCTTGGATTTGCCCTTTTGAATTTGCCTTTATGCCTTACAAGAAAGACGCACTATTCATTATAGACAACATTGTTGATGGCTTCTTTGCCATTGACATCGTGCTGACATTCTTTGTGGCATACCTAGATAGCCATTCTTATCTCCTTGTTGATGATCCTAAGAGAATTGCAATCAGGTACATATCTACCTGGTTTGCTTTTGATGTATGCTCAACAGCACCATTTCAGCCCATTAGTCTCCTTCTCACTAATCATAGCAGTGAGCTTGGCTTCAAAGTTCTTAACATGTTTAGATTATGGCGTTTGAGACGAGTCAGTTCTCTCTTTGCAAGACTTGAAAAGGACATCCGCTTCAATTATTTCTGGACAAGGTGCACAAAACTCATTGCTGTAACCTTGTTTGCAGTGCACTGTGCGGGATGCTTTAACTATCTAATTGCAGATAGGTACCCCGATTCCAAAAGAACATGGATTGGTGCAACGAACCCAAATTTTAAAGAAGACAGTTTATGGGACAGATATGTAACTGCAATATACTGGTCCATTGTCACGCTTACTACCACTGGCTATGGGGATTTACATGCTGAGAACACAAGAGAGATGCTATTTGATATCTCTTACATGCTGTTCAACTTGGGTTTAACTTCATACATCATTGGAAACATGACTAACCTTGTAGTCCACTGGACCAGCCGCACCAGAAATTTTAGAGATACTGTCAAAGCAGCTTCTGAATTTGCTTCAAGAAATCATTTGCCCCACCGCATAGAGGATCAATTGTTGTCACACATATGTTTGAGGTTTAAAACAGAAGGATTGAAGCAGCAAGAAATATTAAATGATCTGCCAAAGGCAATTCGTTCAAGCATTGCATGCCATCTTTTTTTTCCTGTCGTTCAGAAGGTCTACCTCTTCCAAGGAGTTTCCCATGACTTCCTTTTCCAACTGGTTTTAGAAATGGAAGCTGAGTATTTCCCACCCAAGGAAGATGTGATACTGCAAAACGAGTCTTCTACAGACCTTTATGTGCTGGTTGCAGGGGCAGTGGGTTTCGTTCGCTACATTGATGGGCTTGATCAAGTAATCGGGAAAGCAATTGCAGTAGAAACATTTGGAGAGATTGGAGTTTTGTATCATGTGCCACAGCCTTTCACAGTTCGGACCACAGAGCTTTCTCAGATTTTAAGACTCAACAGAACAGCCTTAATGAATGTTTTACAAGCAAATCCAGGAGATGCACAAATTGTAATGGATAACCTTTTAATGAGATTAAAGGGGCATGAAGAGATGGGCTTTGAATATCCACGTGTAGATCCTGGATTGGGTCTTCATGAACTGCATCACGAAGGCAACACAAGAGGAAGCTCTTCTCATGAGTGTACAAGTAATTCACACGGGCATTCATTAAAGCAGGAAGAGAAGTACATAAATATCAGAGACTCAGAGACCAGTTTGCATAAGGTGACTAATGATGATCAGTTAGTTATTAAACATAACATGATCCCTGAGGATGGCAAAAGAGATCTTCATGCCGCTTCAAAGAAAAAGAATCTAGACATGGTTGAAATTCTGCTTGAAAGAGACGCAAATACCAAGAACCAAAATGCCATAGGGGGGACACAAAAAGCTCTAGTAGAACAGCTAAAAAACAAGAGCGTTTCTGACCAAATAATGAGTTCTGAAAGCGAGAAGAAATCAGATGAATATAGAATAAAGATTGCTGAGCCAGATATCCTTAACCTTGACAGGAATGGCACAACAAGAAACAGAAGAGAAGATGGTATTAGATCCATCAACTTGCCATTAGAGAAAGTATACACAAACTCCAATTCAAGAAATTCTAACTTTTCAAGTGATAGAGAAGCGGCAAGATTCATCAAGAAGAGAATAACAATCCACTTGCTATGCGGATCCAGAAGTGCCTTACAGGGAGAGCCTGGAAAACTGATAATTTTACCTGATTCATTAAAAGAGCTGCTCAAGATTGCTGGTGAAAAATTTGGCGGCTTCAACCCGAAAAAAGTTATTAATACAGAGAATGCAGAGATAGATGACATAAATGTCATCAGAGATGGTGATCATCTCTTTCTTCTTTGCAGCGATAGTGAAAAATTGAGTTCATGA 2343 0.4012 MSLSCAKNIFQRFGVDEFHMGSFVHSSFLSNDPLPSLGARMNQETKLQRYIISPFNPRYRAWEMLLVVLVIYSAWICPFEFAFMPYKKDALFIIDNIVDGFFAIDIVLTFFVAYLDSHSYLLVDDPKRIAIRYISTWFAFDVCSTAPFQPISLLLTNHSSELGFKVLNMFRLWRLRRVSSLFARLEKDIRFNYFWTRCTKLIAVTLFAVHCAGCFNYLIADRYPDSKRTWIGATNPNFKEDSLWDRYVTAIYWSIVTLTTTGYGDLHAENTREMLFDISYMLFNLGLTSYIIGNMTNLVVHWTSRTRNFRDTVKAASEFASRNHLPHRIEDQLLSHICLRFKTEGLKQQEILNDLPKAIRSSIACHLFFPVVQKVYLFQGVSHDFLFQLVLEMEAEYFPPKEDVILQNESSTDLYVLVAGAVGFVRYIDGLDQVIGKAIAVETFGEIGVLYHVPQPFTVRTTELSQILRLNRTALMNVLQANPGDAQIVMDNLLMRLKGHEEMGFEYPRVDPGLGLHELHHEGNTRGSSSHECTSNSHGHSLKQEEKYINIRDSETSLHKVTNDDQLVIKHNMIPEDGKRDLHAASKKKNLDMVEILLERDANTKNQNAIGGTQKALVEQLKNKSVSDQIMSSESEKKSDEYRIKIAEPDILNLDRNGTTRNRREDGIRSINLPLEKVYTNSNSRNSNFSSDREAARFIKKRITIHLLCGSRSALQGEPGKLIILPDSLKELLKIAGEKFGGFNPKKVINTENAEIDDINVIRDGDHLFLLCSDSEKLSS 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3398g00010 780 FunFam Potassium channel KAT2 365 501 - -
Gabi3398g00010 780 Pfam Cyclic nucleotide-binding domain 397 481 IPR000595 -
Gabi3398g00010 780 Pfam Ion transport protein 60 306 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gabi3398g00010 780 SUPERFAMILY cAMP-binding domain-like 304 497 IPR018490 -
Gabi3398g00010 780 ProSiteProfiles cAMP/cGMP binding motif profile. 377 496 IPR000595 -
Gabi3398g00010 780 Gene3D Helix hairpin bin 301 367 - -
Gabi3398g00010 780 SUPERFAMILY Voltage-gated potassium channels 54 299 - -
Gabi3398g00010 780 PRINTS EAG/ELK/ERG potassium channel family signature 106 115 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi3398g00010 780 PRINTS EAG/ELK/ERG potassium channel family signature 247 264 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi3398g00010 780 PRINTS EAG/ELK/ERG potassium channel family signature 291 300 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi3398g00010 780 PRINTS EAG/ELK/ERG potassium channel family signature 95 105 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi3398g00010 780 PRINTS EAG/ELK/ERG potassium channel family signature 72 79 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi3398g00010 780 PRINTS EAG/ELK/ERG potassium channel family signature 273 284 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi3398g00010 780 SMART cnmp_10 377 494 IPR000595 -
Gabi3398g00010 780 PANTHER POTASSIUM CHANNEL AKT1 25 501 IPR045319 GO:0005249|GO:0006813
Gabi3398g00010 780 ProSiteProfiles Ankyrin repeat profile. 577 609 IPR002110 GO:0005515
Gabi3398g00010 780 ProSiteProfiles KHA domain profile. 702 780 IPR021789 -
Gabi3398g00010 780 SUPERFAMILY Ankyrin repeat 571 631 IPR036770 -
Gabi3398g00010 780 Gene3D - 60 300 - -
Gabi3398g00010 780 ProSiteProfiles Ankyrin repeat region circular profile. 577 608 - -
Gabi3398g00010 780 CDD CAP_ED 377 490 IPR000595 -
Gabi3398g00010 780 MobiDBLite consensus disorder prediction 522 544 - -
Gabi3398g00010 780 Gene3D Jelly Rolls 370 503 IPR014710 -
Gabi3398g00010 780 Pfam KHA, dimerisation domain of potassium ion channel 701 770 IPR021789 -
Gabi3398g00010 780 FunFam Potassium channel KAT3 61 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3398g00010 Gabi-Chr3398 88946 92785 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3398g00010 1 775 Ion Channels AT4G18290 58.065 0.0 855
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3398g00010 K21867 - gmx:100783528 1238.4