Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3396g00001 ATGGTATCCATGTTTGAAAAGGGAAAGTCCATCAAGATTCTAGCATGCTGGCATGTTCTCTTCATGTTTCTTTGCTTCCTTCTAACACTGTCTGCCTCAACTGTTACTGTGAATGATCAAGTTACAACTGAAGATAGTGAAGCAAATGCTTTGTTAAAGTGGAAACACAGCCTTGAAAATCACAGCCAAGCTCTCTTATCAACTTGGGCAGGTACTAATAGTCCATGCAAATGGGAAGCAATTCAGTGTGACAAATCCAAGTCAGTCTCAACCATTAATCTTGCAAATTATGGACTGAAAGGTACACTCTTCTCTCTCAGTTTCTCCTCATTCCCCAACCTCCTCAGCCTAAATATCTACAACAACTCATTTTATGGAACCATACCCCCACAAGTTGGTAACATGTCCAAAGTTAATGTTCTGAACTTCTCTATAAATTCTTTTCACGGTTCTATTCCTAAAGAAATATGGACATTGAGGAGTTTGCATAGGCTTGATCTTTCCTTATGCCAACTAAATGGAGATATTCCTAATTCCATAGCAAACTTGTCCAACTTATCATATCTAGATTTGTCAAACAACAAATTTTCTGGCTACATTCCTCCTGAGGTTGGAAAATTGAACAACTTGGAGTATCTAGTTATTGGAGCTAATAAATTTTTTGGTTCCATTCCCCAAGAAATTGGAATGTTGACAAACCTTCAGCTCATTGATTTTTCATTGAACTCTCTCTCTGGTACCATCCCCAAAACAATTGGTAACATGAGCAATTTAAATCAACTTTACCTTCCTAATAACATCTTGTCTGGGCCAATTCCACTCTCCTTATGGAACATGTCTAACTTGTCATTGGCCTACATTAATCATAATAATCTTTCTGGATCAATTCCTGTTTCCATAGAAAACATGATTAATTTGGAACAACTTGCCCTTGATTACAACCAGCTTTCTGGATCCATTCCTTCCTCAGTTGGAAACTTGACAAAGCTCACTGTATTATACTTGGGGTTTAATAATTTTGCTGGATCAATTCCTGCTTCTATAGGAAACCTGAACAATTTGGATGCCCTCAATCTCCCAGGAAACAATCTATGTGGATCCATTCCTGCCAGTATTGGGAATTTGACAAGGCTCACTGTCCTTCAATTGGCCACCAACAAACTTAATGGTAGCATTCCAAAGGAGTTAAATAACTTTACCAACTGGAGTTCTTTTATAATATCTGAGAATGATCTCATTGGCCATTTGCCATCCCAAATCTGCTTTGGTGGGTCACTACAGGTCTTTGCTGCTAATAACAACCATTTAAGGGGTCCTGTACCAAGAAGCTTGAAGAACTGCTCTAGTATTGTTAGACTCAGGCTTGAGGGAAACCAAATGGAAGGAGATATAGCACAAGATTTTGGTGTATATCCAAATTTGAAGTATATTGATCTGAGTGACAACAAATTTTATGGCCACATTTCAACAAACTGGGGGAAGTGCATGAATCTTGATAGCTTCATGATATCCAACAATAATCTATCTGGTGGTATACCAGTAGAACTTGTTGGTGCAACCAAACTAGGAAGGCTTCACCTTTCATCCAATCACTTGACAGGAAAGGTTCCAAAGGAACTCTGGAATTTGAAAAGTTTAGTTGAACTCAAGATCAGCAACAATCATTTTTCAGGAAACATTCCCAGAGAAATAGGATTGCTACAGAATCTTCAACACTTGGATCTAGCAGGAAACCAGTTGAGTGGCACAATACCAAACCAAGTTGTGAGCTTATCCAATTTACTTGAGTTGAATTTGAGCAACAATAAAATAAATGGAAGCATTCCCTCTGAATTTGGCCAATTACAACCTCTTGAATCTGTTGATCTTAGTGGGAATTTATTGAGTGGAACAATACCAACAGTGCTTGGAGATTTGAAGCACTTGCAATGGTTGAATCTCTCACGCAATAATCTTTCTGGCACCATTCCATCCAGTTTTAACAGCATGTCAAGCTTGATTTCTGTCAACATATCATACAACCAGTTAGAAGGGCCACTTCCTGAAAATCAAGCCTTTCTTAAGGCTCCAATTGAATCATTAAAAAATAACAAAGGCTTGTGTGGAAATGTCACAGGCTTGGTTCTTTGCCCAACCAACCACAGTGGAAAGAGCAACAAAGTCATCCTATTGGTATTCCCTATTTTGGGAGCAATAATACTAATGTTTTGTGGGGTGGGAATTTCAATGTATATTCTTTGTAGAAGTAAAAGAAAGGAAGAAAGCCACTCTAGAGAAGTAGTACCCTTTTCCATATGGAGTTATGATGGGAAAATAATGTTTGAAAATATCATTGAAGCTACAGAGAATTTTCATGACAAATATCTAATTGGAATGGGAAGTCAAGGATATGTTTACAAGGCTATGTTACCAGCAGGCCTTGTTGTTGCTGTGAAAAAATTTCATTCGGTGACAGATGAGGAAGAGTCAAATTTCAGTTTAAAGGCTTTTAAAAGTGAGATTCAAACCTTGACAGAAATCAAACACAGGAACATTGTAAAGCTTCATGGTTTTTGTACTCATTTACGGTTCTCATTTTTGGTGTATGAGTTCTTGGAAGGGGGTAGCTTGGATCAAGTACTAATCAATGACACACAAGCAATTGCATTTGAGTGGAAAAAGAGGGTGAATGTTGTTAAAGGAGTGGCCAATGCTTTATCCTATATGCATCATGATTGTTCACCTCCTATAGTTCATCGTGACATATCAAGCAAGAATGTTCTTCTAGATCTTGAATATGAAGCTCATGTCTCTGACTTTGGGACTGCTAAGTTTCTGAAGCCTAGTTCAAGTAGTTGGACCCCATTTGCTGGTACCTTTGGATATGCTGCTCCAGAGCTGGCCCAGACAATGGAAGTGACTGAGAAATGTGATGTTTATAGTTTTGGAGTACTTGCTTTGGAAATCATTATGGGAAAGCATCCAGGAGATCTTATTTCTTCATTTATGTCACCATCTACATCACCAATGGCTAATGATTTGCTATTGATTGATGTCATAGATCAAAGGCCTCCTCAACCTTTGGAACCAATTGATGGTGAGGTGATATTGATTACAAGGTTGGCATTTGCTTGCTTGAGTGAAAGTCCACGTTCTCGACCAAGCATGGATCAAGTATCTAAGGCACTTGTTATAGGAAAATCACCTTTAGTGGACCAGTTTCCCATGATTAGACTAGGACAACTATACTGA 3231 0.3835 MVSMFEKGKSIKILACWHVLFMFLCFLLTLSASTVTVNDQVTTEDSEANALLKWKHSLENHSQALLSTWAGTNSPCKWEAIQCDKSKSVSTINLANYGLKGTLFSLSFSSFPNLLSLNIYNNSFYGTIPPQVGNMSKVNVLNFSINSFHGSIPKEIWTLRSLHRLDLSLCQLNGDIPNSIANLSNLSYLDLSNNKFSGYIPPEVGKLNNLEYLVIGANKFFGSIPQEIGMLTNLQLIDFSLNSLSGTIPKTIGNMSNLNQLYLPNNILSGPIPLSLWNMSNLSLAYINHNNLSGSIPVSIENMINLEQLALDYNQLSGSIPSSVGNLTKLTVLYLGFNNFAGSIPASIGNLNNLDALNLPGNNLCGSIPASIGNLTRLTVLQLATNKLNGSIPKELNNFTNWSSFIISENDLIGHLPSQICFGGSLQVFAANNNHLRGPVPRSLKNCSSIVRLRLEGNQMEGDIAQDFGVYPNLKYIDLSDNKFYGHISTNWGKCMNLDSFMISNNNLSGGIPVELVGATKLGRLHLSSNHLTGKVPKELWNLKSLVELKISNNHFSGNIPREIGLLQNLQHLDLAGNQLSGTIPNQVVSLSNLLELNLSNNKINGSIPSEFGQLQPLESVDLSGNLLSGTIPTVLGDLKHLQWLNLSRNNLSGTIPSSFNSMSSLISVNISYNQLEGPLPENQAFLKAPIESLKNNKGLCGNVTGLVLCPTNHSGKSNKVILLVFPILGAIILMFCGVGISMYILCRSKRKEESHSREVVPFSIWSYDGKIMFENIIEATENFHDKYLIGMGSQGYVYKAMLPAGLVVAVKKFHSVTDEEESNFSLKAFKSEIQTLTEIKHRNIVKLHGFCTHLRFSFLVYEFLEGGSLDQVLINDTQAIAFEWKKRVNVVKGVANALSYMHHDCSPPIVHRDISSKNVLLDLEYEAHVSDFGTAKFLKPSSSSWTPFAGTFGYAAPELAQTMEVTEKCDVYSFGVLALEIIMGKHPGDLISSFMSPSTSPMANDLLLIDVIDQRPPQPLEPIDGEVILITRLAFACLSESPRSRPSMDQVSKALVIGKSPLVDQFPMIRLGQLY 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3396g00001 1076 SMART LRR_typ_2 231 255 IPR003591 -
Gabi3396g00001 1076 SMART LRR_typ_2 111 135 IPR003591 -
Gabi3396g00001 1076 SMART LRR_typ_2 375 399 IPR003591 -
Gabi3396g00001 1076 SMART LRR_typ_2 591 615 IPR003591 -
Gabi3396g00001 1076 SMART LRR_typ_2 303 326 IPR003591 -
Gabi3396g00001 1076 SMART LRR_typ_2 183 207 IPR003591 -
Gabi3396g00001 1076 SMART LRR_typ_2 639 662 IPR003591 -
Gabi3396g00001 1076 SMART LRR_typ_2 327 351 IPR003591 -
Gabi3396g00001 1076 SMART LRR_typ_2 567 590 IPR003591 -
Gabi3396g00001 1076 SMART LRR_sd22_2 375 398 - -
Gabi3396g00001 1076 SMART LRR_sd22_2 615 641 - -
Gabi3396g00001 1076 SMART LRR_sd22_2 183 212 - -
Gabi3396g00001 1076 SMART LRR_sd22_2 231 257 - -
Gabi3396g00001 1076 SMART LRR_sd22_2 327 353 - -
Gabi3396g00001 1076 SMART LRR_sd22_2 567 596 - -
Gabi3396g00001 1076 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 203 295 - -
Gabi3396g00001 1076 Pfam Leucine rich repeat N-terminal domain 45 84 IPR013210 -
Gabi3396g00001 1076 Pfam Leucine rich repeat 569 628 IPR001611 GO:0005515
Gabi3396g00001 1076 Pfam Leucine rich repeat 160 219 IPR001611 GO:0005515
Gabi3396g00001 1076 Pfam Leucine rich repeat 305 364 IPR001611 GO:0005515
Gabi3396g00001 1076 FunFam MDIS1-interacting receptor like kinase 2 865 1062 - -
Gabi3396g00001 1076 Gene3D Ribonuclease Inhibitor 378 711 IPR032675 -
Gabi3396g00001 1076 PANTHER LEUCINE RICH REPEAT KINASE 2 348 1058 - -
Gabi3396g00001 1076 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 399 714 - -
Gabi3396g00001 1076 Gene3D Transferase(Phosphotransferase) domain 1 865 1061 - -
Gabi3396g00001 1076 Gene3D Phosphorylase Kinase; domain 1 745 864 - -
Gabi3396g00001 1076 ProSiteProfiles Leucine-rich repeat profile. 593 615 IPR001611 GO:0005515
Gabi3396g00001 1076 ProSitePatterns Tyrosine protein kinases specific active-site signature. 910 922 IPR008266 GO:0004672|GO:0006468
Gabi3396g00001 1076 SUPERFAMILY Protein kinase-like (PK-like) 761 1056 IPR011009 -
Gabi3396g00001 1076 FunFam Leucine-rich repeat receptor protein kinase MSP1 747 864 - -
Gabi3396g00001 1076 SUPERFAMILY RNI-like 92 412 - -
Gabi3396g00001 1076 FunFam MDIS1-interacting receptor like kinase 2 isoform A 296 396 - -
Gabi3396g00001 1076 FunFam MDIS1-interacting receptor like kinase 2 isoform A 44 200 - -
Gabi3396g00001 1076 Gene3D Ribonuclease Inhibitor 43 200 IPR032675 -
Gabi3396g00001 1076 Gene3D Ribonuclease Inhibitor 201 301 IPR032675 -
Gabi3396g00001 1076 PRINTS Leucine-rich repeat signature 186 199 - -
Gabi3396g00001 1076 PRINTS Leucine-rich repeat signature 591 604 - -
Gabi3396g00001 1076 SUPERFAMILY RNI-like 356 681 - -
Gabi3396g00001 1076 ProSiteProfiles Protein kinase domain profile. 784 1064 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3396g00001 1076 Pfam Protein kinase domain 784 1054 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3396g00001 1076 Gene3D Ribonuclease Inhibitor 304 376 IPR032675 -
Gabi3396g00001 1076 Pfam Leucine Rich Repeat 641 662 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3396g00001 Gabi-Chr3396 20559 24356 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3396g00001 41 958 Receptor kinase-like Gene Family AT4G08850 44.635 0.0 743
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi3396g00001 Pkinase 1.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3396g00001 - - gmx:100815688 1477.61