Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3395g00007 ATGTCATTCGATTCTCTGGGATCACTAGAAGAAGGTGGCAGCTCAATCTCAGCGAATTCTCACAAGAAAATGGGAAGAGGGAAAATTGAAATCAAACGGATCGAGAACACTACAAATAGACAAGTCACCTTCTGCAAGCGCCGCAACGGGTTGCTGAAGAAAGCTTATGAACTATCTGTTTTGTGTGATGCTGAAGTTGCTCTTGTTGTCTTCTCAAGCCGTGGCCGCTTGTATGAGTATGCCAACAACAGTGTTAGAGCAACTATTGAAAGGTACAAAAAAGCCTGTGCTGCTTCGTCAAACGCAGAATCTGTGTCCGAAGCTAATACACAGTTTTACCAGCAAGAATCATCCAAACTGAGAAGACAGATTCGAGATATTCAGAATCTAAACAGGCACATCCTTGGTGAAGCTATAAGCTCTCTTAGTATCAAGGAACTAAAGAACCTTGAGGGTAGATTGGAGAAAGGTTTAAGCAGAGTTAGATCTAGAAAGCATGAAACGTTGTTTGCTGATGTCGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCATAATAATTATCTGCGAGCTAAGATAGCTGAACATGAGAGAGCTGAACAACAGCAACAAGATTTGATGCCAGGAACTTTGTGCGAGTCCTTACCATCACAATCATATGACCGGAATTTCTTTCCAGTAAATCTCTTAGGATCTGATCATGAATATTCACGTCAAGACCAAACTGCTCTCCAACTTGTGTAA 747 0.4163 MSFDSLGSLEEGGSSISANSHKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRATIERYKKACAASSNAESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEAISSLSIKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIAEHERAEQQQQDLMPGTLCESLPSQSYDRNFFPVNLLGSDHEYSRQDQTALQLV 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3395g00007 248 SMART madsneu2 24 83 IPR002100 GO:0003677|GO:0046983
Gabi3395g00007 248 Coils Coil 113 133 - -
Gabi3395g00007 248 Pfam K-box region 108 194 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi3395g00007 248 ProSitePatterns MADS-box domain signature. 26 80 IPR002100 GO:0003677|GO:0046983
Gabi3395g00007 248 Gene3D - 36 104 IPR036879 GO:0003677|GO:0046983
Gabi3395g00007 248 Coils Coil 183 203 - -
Gabi3395g00007 248 CDD MADS_MEF2_like 25 101 IPR033896 GO:0000977|GO:0045944
Gabi3395g00007 248 ProSiteProfiles MADS-box domain profile. 24 84 IPR002100 GO:0003677|GO:0046983
Gabi3395g00007 248 MobiDBLite consensus disorder prediction 1 24 - -
Gabi3395g00007 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 24 204 - -
Gabi3395g00007 248 MobiDBLite consensus disorder prediction 1 21 - -
Gabi3395g00007 248 FunFam agamous-like MADS-box protein AGL11 36 119 - -
Gabi3395g00007 248 ProSiteProfiles K-box domain profile. 110 200 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi3395g00007 248 SUPERFAMILY SRF-like 25 99 IPR036879 GO:0003677|GO:0046983
Gabi3395g00007 248 PRINTS MADS domain signature 26 46 IPR002100 GO:0003677|GO:0046983
Gabi3395g00007 248 PRINTS MADS domain signature 61 82 IPR002100 GO:0003677|GO:0046983
Gabi3395g00007 248 PRINTS MADS domain signature 46 61 IPR002100 GO:0003677|GO:0046983
Gabi3395g00007 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 33 80 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3395g00007 Gabi-Chr3395 161180 174455 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3395g00007 1 248 MADS-box Gene Family AT3G58780 69.531 1.63e-124 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi3395g00007 K-box 6.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3395g00007 K09264 - gmx:100808734 409.838