Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3395g00004 ATGGCTGCAAGCTTTGCTTCCAGATGTTCTCGTGTGGGCCGTTCTCTGTTTAGCGGATTAAGCAACACTTCACCTGGTTTATTTACCACTTCACATGAGATGACATGCAGCAATTTCTTTTCTCAGCAACGCACCTTCATACAGATGAGGACTGTTCTGAAGGTTGTGGACAATTCTGGGGCTAAAAAGGTGATGTGCATACAGGCATTGAAAGGGAAGAAAGGGGCAAGATTAGGTGACACAATAATAGCCTCAGTGAAGGAGGCTCATCCTAATGGAAAAGTGAAGAAAGGAAAGGTTGTATATGGGGTAGTTGTACGTGCAGCAATGCCAAGGGGGCGTTGTGATGGCAGTGAGGTCAAGTTTGATGACAATGCTGTGGTGCTTGTTGACAAGCAAGGCCAGCCTATTGGAACCAGAGTTTTTGGGCCAGTGCCTCATGAGCTCAGGCGGAAGAAGCATGTCAAGATTCTTACCTTGGCAGGGCATATCGCATAA 498 0.4679 MAASFASRCSRVGRSLFSGLSNTSPGLFTTSHEMTCSNFFSQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIIASVKEAHPNGKVKKGKVVYGVVVRAAMPRGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRRKKHVKILTLAGHIA 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3395g00004 165 Gene3D Ribosomal protein L14 46 165 IPR036853 GO:0003735|GO:0005840|GO:0006412
Gabi3395g00004 165 FunFam 50S ribosomal protein HLP, mitochondrial-like 46 165 - -
Gabi3395g00004 165 SUPERFAMILY Ribosomal protein L14 47 164 IPR036853 GO:0003735|GO:0005840|GO:0006412
Gabi3395g00004 165 Hamap 50S ribosomal protein L14 [rplN]. 46 165 IPR000218 GO:0003735|GO:0005840|GO:0006412
Gabi3395g00004 165 ProSitePatterns Ribosomal protein L14 signature. 103 129 IPR019972 -
Gabi3395g00004 165 Pfam Ribosomal protein L14p/L23e 47 164 IPR000218 GO:0003735|GO:0005840|GO:0006412
Gabi3395g00004 165 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 47 164 IPR000218 GO:0003735|GO:0005840|GO:0006412
Gabi3395g00004 165 NCBIfam 50S ribosomal protein L14 47 164 IPR005745 GO:0003735|GO:0006412|GO:0015934
Gabi3395g00004 165 SMART Ribosomal_L14_2 46 165 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3395g00004 Gabi-Chr3395 71714 76644 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3395g00004 57 148 Cytoplasmic Ribosomal Protein Gene Family AT3G04400 37.374 1.76e-10 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3395g00004 K02874 - gmx:100818301 288.885