Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi338g00007 ATGAGCAAAACGGTGCGTAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGTGCTTCTACGAGTCACAAGACCGTTTGCTTTCTCTTTCATCCTCTTGCTCATGCTCAGCCTCCAACTCCGACGACGACGACGACGAAAAACAACCACCGCAACAACCACCACAACCACAACCGCAACCGCAACAACAACACTCCACAAACAACAATTACTACAATTACAATTTCGCCCTCAACAACTACGACATATGGATCTCCCAACCTTCCTCCGTCTCCGAACGCCGCACCCGCCTCCTCCAAAACATGGGACTCTCCGACGACCCTTCCCTGACACGTGGCAAGCCTGACATCATCAATGCCGACTTCTCCCGATCCGTTTCCTCCGATCACCTCAACCAACACCCGCCCAAAACCTCCGCCTCCGCCGCAGCAGCCGCCGCTTCCATGGTCCGATCGAAATCAGACGGCGCGTGTGAGAATTATAATAATAGTAACAACAACAGTAATAATAATAATGATTCGTCTTCTTCGATTCTTTCCATTCTTTCTGTAAATAACCGGAATGGCGAGGGTGGGTCCCCAGGGAAGCCTCCTTCGGGGAAGAGTTGCAAGGGGAGCGAATCGTCGCCGTCGGCGGTGGTGGTTGTGGAGGAGGAGGTGGAGAGGGTGAAGGAAACGGAAACGGAAAAGGAAAAGGAACAACAAGTGTGCACCATAAGAGATCTTGATAATGGGAAGGAGTTTGTGGTGAAGGAGGTTAGGGAAGATGGGATGTGGGACAAGCTCAGGGAGGTCGAGACAGGTAGGCAGTTTACCATGGAAGAGTTCCAGATGACGGTGGTGGGGCACTCGCCGATTGTTCAGGAGTTAATGCGCCGGCAGAACGTGGAGGAGGGTAATGGTAATGGTAATGCTAAGGACAATGTTGATAACATTTTCAATGCTAATGGAGGGAATGGAAGTGGAGGAGGAGGAGGAGGTGGCGGTGGTAGTGGTGGTGGTGGTGGTTTCAAGGTGAAGAAGAAAGGTGGGTGGTTGAAGAGTATCAAGAGTGTTGCAAGTTCAATGGCGGGTCATAAGGAGAGGCGGAGTAGCGACGAGAGGGATACCTCGTCGGAGAAGGGTGGAAGGAGGTCGAGTTCTGCCACTGATGATAGCCAGGATGCTGCTGCTGCTGCTACTTCATTTCATGGACCTGAGAGGGTGAGGGTTAGACAGTATGGGAAGTCATGTAAAGAGCTTACTGCAATGTATAAGAGCCAGGAGATACGGGCTCATAATGGATCTATATGGAGTATTAAGTTTAGTTTGGATGGGAAGTATCTTGCCAGTGCTGGTGAGGATTCTGTGATTCATGTTTGGCAGGTTGTGGAGTCAGAGAGGAAAGGGGAGCTGCTGATGGAGAGACCAGACGATGGGAATGTCAATATGTTGTTTGTCGTAAATGCGTCGCCGGAATCTGCTGCGCTTCTGTCCCCTACCATGGATAGCAACCATCCGGAGAAGAGGAGAAAGGGGAGGTCATCCATTAGCAGAAAGTCACTGAGCTTGGACCAATTCGTGGTGCCAGAAACTGTGTTTGCACTCACAGAAAAACCCATTTGCTCCTTTCAAGGCCATGTCGATGATGTGCTTGACCTTTCCTGGTCAAAGTCTCAGCACTTGCTTTCATCTTCAATGGACAAAACAGTGCGGCTATGGCATTTGTCGAGCAAGTCTTGTTTGAAAATTTTTTCACACAGTGACTTTGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGCGGATCTTTGGATGCTAAGGTTCGCATATGGAGCATACCTGAACGAAAAGTTGTTGATTGGGTTGATCTGCATGAGATGGTCACTGCTGCTTGTTATACTCCTGACGGTCAGGGTGCCCTAGTTGGTTCATACAAGGGTAGCTGCCATTTATATAATACATCTGAAAATAAGTTGCAACAGAAAAGTCAGATCAATCTGCAGAACAAGAAAAAGAAATCACATCACAAGAAAATTACTGGTTTCCAGTTTGCCCCAGGAAGTTCATCAGAAGTACTTATCACATCTGCTGATTCACGAATACGGGTTGTTGATGGTGTTGATCTGGTTCATAAGTTTAAAGGCTTTCGTAATGCAACTAGCTCAATTTCAGCCTCCCTCACAGCAAATGGTAAATATGTTGTCGCTGCGAGTGAGGATTCTCATGTATACATCTGGAAAAATGAAGCCGATTGCAGGCCTAACAGAAGTAAAAGTGTGACTGTCACGCGTTCATATGAACTTTTTCACTGTAAAGATGTGTCAGTGGCCATTCCTTGGCCTGGCATTGGTGATGCATGGGACATGCATGATGCATTTTCTGGAGAACAACCTGAGCTTGATAACAACACTGATGAAGTCTCATCGGCCAATCATCCTCCTACCCCTGTAGATGAAAACTTTGGTACCGAGGGTTCCCGATCTGCCTCAGTTTACAACAATAGTCCGCGTCATGCAACCATTGGAAGTGCGACAAACAGTTACTTTTTTGATAGAATTGCAACATGGCCAGAAGAAAAACTTCTTCTAAGTGCAAGAAATCATAGCCCCCGTGTCAGTTTGGATTTCTCTAATGGGGTTAGTCAAAAAATGTCAGCCTGGGGTATGGTGATTGTAACTGCCGGCCTTCGAGGTGAAATTAGAACTTTCCAAAATTTTGGATTGCCCCTTCGGATATAA 2733 0.4705 MSKTVRKEEEEEEEEEEECFYESQDRLLSLSSSCSCSASNSDDDDDEKQPPQQPPQPQPQPQQQHSTNNNYYNYNFALNNYDIWISQPSSVSERRTRLLQNMGLSDDPSLTRGKPDIINADFSRSVSSDHLNQHPPKTSASAAAAAASMVRSKSDGACENYNNSNNNSNNNNDSSSSILSILSVNNRNGEGGSPGKPPSGKSCKGSESSPSAVVVVEEEVERVKETETEKEKEQQVCTIRDLDNGKEFVVKEVREDGMWDKLREVETGRQFTMEEFQMTVVGHSPIVQELMRRQNVEEGNGNGNAKDNVDNIFNANGGNGSGGGGGGGGGSGGGGGFKVKKKGGWLKSIKSVASSMAGHKERRSSDERDTSSEKGGRRSSSATDDSQDAAAAATSFHGPERVRVRQYGKSCKELTAMYKSQEIRAHNGSIWSIKFSLDGKYLASAGEDSVIHVWQVVESERKGELLMERPDDGNVNMLFVVNASPESAALLSPTMDSNHPEKRRKGRSSISRKSLSLDQFVVPETVFALTEKPICSFQGHVDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKSCLKIFSHSDFVTCIQFNPVDDRYFISGSLDAKVRIWSIPERKVVDWVDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSQINLQNKKKKSHHKKITGFQFAPGSSSEVLITSADSRIRVVDGVDLVHKFKGFRNATSSISASLTANGKYVVAASEDSHVYIWKNEADCRPNRSKSVTVTRSYELFHCKDVSVAIPWPGIGDAWDMHDAFSGEQPELDNNTDEVSSANHPPTPVDENFGTEGSRSASVYNNSPRHATIGSATNSYFFDRIATWPEEKLLLSARNHSPRVSLDFSNGVSQKMSAWGMVIVTAGLRGEIRTFQNFGLPLRI 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi338g00007 910 SMART WD40_4 613 651 IPR001680 GO:0005515
Gabi338g00007 910 SMART WD40_4 416 455 IPR001680 GO:0005515
Gabi338g00007 910 SMART WD40_4 571 610 IPR001680 GO:0005515
Gabi338g00007 910 SMART WD40_4 704 745 IPR001680 GO:0005515
Gabi338g00007 910 SMART WD40_4 530 568 IPR001680 GO:0005515
Gabi338g00007 910 SMART WD40_4 658 703 IPR001680 GO:0005515
Gabi338g00007 910 MobiDBLite consensus disorder prediction 795 827 - -
Gabi338g00007 910 MobiDBLite consensus disorder prediction 490 510 - -
Gabi338g00007 910 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 577 611 - -
Gabi338g00007 910 MobiDBLite consensus disorder prediction 25 39 - -
Gabi338g00007 910 SUPERFAMILY WD40 repeat-like 418 747 IPR036322 GO:0005515
Gabi338g00007 910 ProSiteProfiles Trp-Asp (WD) repeats profile. 537 577 IPR001680 GO:0005515
Gabi338g00007 910 Pfam WD domain, G-beta repeat 573 610 IPR001680 GO:0005515
Gabi338g00007 910 Pfam WD domain, G-beta repeat 532 567 IPR001680 GO:0005515
Gabi338g00007 910 Pfam WD domain, G-beta repeat 421 454 IPR001680 GO:0005515
Gabi338g00007 910 Pfam WD domain, G-beta repeat 708 745 IPR001680 GO:0005515
Gabi338g00007 910 MobiDBLite consensus disorder prediction 126 214 - -
Gabi338g00007 910 PRINTS G protein beta WD-40 repeat signature 555 569 IPR020472 -
Gabi338g00007 910 PRINTS G protein beta WD-40 repeat signature 597 611 IPR020472 -
Gabi338g00007 910 PRINTS G protein beta WD-40 repeat signature 442 456 IPR020472 -
Gabi338g00007 910 ProSiteProfiles Trp-Asp (WD) repeats profile. 577 611 IPR001680 GO:0005515
Gabi338g00007 910 Gene3D - 361 499 IPR015943 GO:0005515
Gabi338g00007 910 FunFam WD repeat-containing protein 44 518 784 - -
Gabi338g00007 910 MobiDBLite consensus disorder prediction 1 72 - -
Gabi338g00007 910 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 423 456 - -
Gabi338g00007 910 MobiDBLite consensus disorder prediction 297 317 - -
Gabi338g00007 910 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 537 571 - -
Gabi338g00007 910 MobiDBLite consensus disorder prediction 353 397 - -
Gabi338g00007 910 MobiDBLite consensus disorder prediction 155 192 - -
Gabi338g00007 910 ProSiteProfiles Trp-Asp (WD) repeats profile. 423 464 IPR001680 GO:0005515
Gabi338g00007 910 PANTHER WD REPEAT DOMAIN 44 10 907 IPR040324 -
Gabi338g00007 910 Gene3D - 513 766 IPR015943 GO:0005515
Gabi338g00007 910 Coils Coil 213 236 - -
Gabi338g00007 910 MobiDBLite consensus disorder prediction 356 381 - -
Gabi338g00007 910 MobiDBLite consensus disorder prediction 790 827 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi338g00007 Gabi-Chr338 21935 28122 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi338g00007 534 742 U-box Gene Family AT2G33340 25.446 9.49e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi338g00007 K20241 - qsa:O6P43_029073 1057.36