Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3388g00001 ATGGTGATCGCCTCCGGTGAACGGGTGGACTCCGTTTCCGGCGCCTCTGTTTATTCACCATCTTCACATTCGTTGCCATCATCTTCACGAAACACAATGCGTGTGACAAATCGTCAAGCAACGAATTGGAGTGGTGGACAACACACCAGTGGTAGGTTTTGGGTGAGAAAGAAGATGACAGAGGTGGCGAGGTCAGTGGTGAACGACGTTTTGGGACAAAGGATTATCGACGTGGATGAGCCAATCGTTGATTACATCGTTAACGTCCTCGCAGACGATGACTTCGATTTCGGACTCGACGGCGAAGGCGCTTTCGAAGCCCTCGGAGAACTTCTCGTCGCCGCCGGCTGCGTCGACGATTCCTCTCACTGTCGCACTGTATGTAGCAAGCTATCTGACAAGTTCGGGAAGCATGGTTTGGTGAAAGCGAAACCAACGGTGCGAAGCCTTGCGGCGCCGTTTAGAATGAACGAGGGAATGGACGATGGTGTAGCTCCTAAGAAGAAGCCTGAACCCGTTGATGGTCCTCTTCTATCGGAACGCGATCGTTTAAAGCTAGAAAGGAGAAAGAGAAAAGATGAACGCCAGAGAGAGGCACAATTTCAAATGCATTTAGCGGAGATGGAAGCAGCGCGGGCGGGTATGCCTGTTGTATGTGTTACGCATGATAACAGTGGTGGACATACTGTCAAGGACATTCATATGGAGGGTTTCAATATATCTGTTGGTGGCCGTGATCTCATTGTTGATGGTTCCGTCACACTTTCTTTTGGAAGGCATTATGGTCTTGTTGGAAGAAATGGGACAGGAAAAACGACTTTCCTCAGGCACATGGCCATGCATGCTATTGATGGTATTCCTAGGAATTGTCAGATATTGCATGTGGAGCAAGAAGTTGTTGGTGATGATATAACTGCCTTGCAGTGTGTTCTTAATTCTGACATTGAGAGAACTCAGCTTCTGCAGGAAGAAGCTCAATTACTTGCCAAACAGAGGGAATCTGAGGAGAAAATTGGAAAGGGCAATGATAATTTGAATGGAGGGGTTGGTAAAGATGCTATTTCACAAAGGCTTGAGGAAATATACAAGAGGCTTGAGTTCATTGATGCTGATTCTGCAGAGTCACGGGCAGCATCGATACTTGCGGGTCTAAGTTTCACTACTGAGATGCAGAGGAAGGCAACAAAAACTTTTTCTGGAGGATGGCGGATGCGAATAGCTCTTGCTCGCGCACTGTTTATAGAGCCTGATATATTACTTCTTGATGAGCCTACGAATCATCTTGATCTCCATGCTGTCTTATGGCTTGAATCATACTTGGTTAAATGGCCAAAAACATTTATTGTTGTTTCTCATGCTAGAGAATTTTTAAACCTGGTGGTTACTGATATAATTCACTTACAAAACCAAAAGCTGACTACTTATAAAGGAAATTATGATAATTTTGAGAAGACCCGAGAAGAACAAATTAAAAACCAGCAAAAAGCATTAGAGGCAAATGAAAAAGCAAGATCTCATATGCAGACCTTCATTGACAAGTTCCGCTATAATGCCAAGAGGGCATCACTTGTTCAATCTAGAATCAAGGCTTTGGAACGAATGGGCCATGTTGATGAAATTGTTAATGATCCTGACTACAAGTTTGAGTTCCCCACTCCAGATGATAGACCAGGCCCACCGATAATAAGTTTCAGTGATGCATCATTTGGTTATCCTGGGGGGCCCATTCTATTTAGAAATTTGAACTTTGGGATTGATCTTGACAGCCGTGTTGCAATGGTTGGTCCAAATGGCATTGGCAAATCAACTATACTTAAGTTAATTGCTGGGGAATTACAGCCCAGTTCTGGGACAGTCTTCCGTTCTGCTAAGGTTCGTATAGCAGTGTTCAGTCAGCACCATGTTGATGGACTTGACTTATCCTCAAATCCTCTTCTGTATATGATGCGCTGCTATCCTGGTGTTCCAGACCAGAAGCTTCGAGCCCACTTAGGTTCTTTTGGTGTAACGGGAAATCTTGCACTTCAGCCGATGTATACCTTGTCAGGTGGTCAGAAAAGCAGGGTTGCATTTGCAAAGATAACTTTTAAGAAGCCACACATAATATTGCTTGACGAGCCATCCAATCATCTGGACTTGGATGCTGTTGAGGCGCTAATTCAAGGTCTGGTGATGTTCCAAGGAGGCATTCTCATGGTAAGTCACGATGAGCACCTTATCTCTGGAAGCGTGGACGAGCTATGGGTTGTATCCGAAGGAAGAGTGTCCCCATTCCAAGGAAACTTCCATGATTATAAGAAGATACTCCAGTCATCGTAG 2319 0.4485 MVIASGERVDSVSGASVYSPSSHSLPSSSRNTMRVTNRQATNWSGGQHTSGRFWVRKKMTEVARSVVNDVLGQRIIDVDEPIVDYIVNVLADDDFDFGLDGEGAFEALGELLVAAGCVDDSSHCRTVCSKLSDKFGKHGLVKAKPTVRSLAAPFRMNEGMDDGVAPKKKPEPVDGPLLSERDRLKLERRKRKDERQREAQFQMHLAEMEAARAGMPVVCVTHDNSGGHTVKDIHMEGFNISVGGRDLIVDGSVTLSFGRHYGLVGRNGTGKTTFLRHMAMHAIDGIPRNCQILHVEQEVVGDDITALQCVLNSDIERTQLLQEEAQLLAKQRESEEKIGKGNDNLNGGVGKDAISQRLEEIYKRLEFIDADSAESRAASILAGLSFTTEMQRKATKTFSGGWRMRIALARALFIEPDILLLDEPTNHLDLHAVLWLESYLVKWPKTFIVVSHAREFLNLVVTDIIHLQNQKLTTYKGNYDNFEKTREEQIKNQQKALEANEKARSHMQTFIDKFRYNAKRASLVQSRIKALERMGHVDEIVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFRNLNFGIDLDSRVAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCYPGVPDQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVMFQGGILMVSHDEHLISGSVDELWVVSEGRVSPFQGNFHDYKKILQSS 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3388g00001 772 CDD ABCF_EF-3 562 754 - -
Gabi3388g00001 772 Pfam ABC transporter 579 709 IPR003439 GO:0005524
Gabi3388g00001 772 MobiDBLite consensus disorder prediction 158 177 - -
Gabi3388g00001 772 Pfam ABC transporter 465 545 IPR032781 -
Gabi3388g00001 772 ProSitePatterns ABC transporters family signature. 398 412 IPR017871 GO:0005524|GO:0016887
Gabi3388g00001 772 SMART AAA_5 257 471 IPR003593 GO:0016887
Gabi3388g00001 772 SMART AAA_5 587 754 IPR003593 GO:0016887
Gabi3388g00001 772 MobiDBLite consensus disorder prediction 1 34 - -
Gabi3388g00001 772 FunFam ATP-binding cassette sub-family F member 3 524 772 - -
Gabi3388g00001 772 MobiDBLite consensus disorder prediction 161 177 - -
Gabi3388g00001 772 ProSitePatterns ABC transporters family signature. 681 695 IPR017871 GO:0005524|GO:0016887
Gabi3388g00001 772 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 233 496 IPR027417 -
Gabi3388g00001 772 CDD ABCF_EF-3 233 471 - -
Gabi3388g00001 772 FunFam ABC transporter F family member 3 185 507 - -
Gabi3388g00001 772 Gene3D - 525 772 IPR027417 -
Gabi3388g00001 772 MobiDBLite consensus disorder prediction 12 34 - -
Gabi3388g00001 772 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 543 760 IPR027417 -
Gabi3388g00001 772 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 216 771 - -
Gabi3388g00001 772 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 233 494 IPR003439 GO:0005524
Gabi3388g00001 772 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 562 771 IPR003439 GO:0005524
Gabi3388g00001 772 Pfam ABC transporter 252 426 IPR003439 GO:0005524
Gabi3388g00001 772 Gene3D - 226 524 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3388g00001 Gabi-Chr3388 29745 38684 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3388g00001 518 723 Calmodulin-binding Proteins AT2G36910 26.033 8.31e-11 63.9