Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3379g00026 ATGCAAATGATGCCCGGTGATCCCTTTTCTCAATCCACTTCAATTGGAGGGTTTTCTCAAGAACAAAACACAAACCCAAACCCTAACCCTAAACCTAATCCTGTCCCCAAGAAGAAGAGAAATCTACCAGGAACACCAGATCCAGATGCCGAGGTCATTGCTCTTTCACCAAAGACCCTCATGGCAACGAACAGATTCATCTGTGAAATATGCAACAAAGGGTTTCAGAGAGATCAAAACCTTCAGCTTCATCGAAGGGGTCACAACCTTCCATGGAAGCTACGACAGAGGTCCAACAAAGAGGTGAAGAAGAAGGTTTACATCTGCCCTGAGAAGACTTGCGTTCACCATGACCCATCAAGAGCACTCGGTGACCTCACAGGTATAAAAAAGCACTTCAGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGTGAGAAGTGCTCTAAGAAATACGCAGTCCAATCAGATTGGAAAGCTCACACCAAAACCTGTGGCACTAGAGAATACAAGTGTGACTGTGGCACCCTCTTCTCCAGGAAGGACAGCTTTATAACTCATAGAGCATTCTGTGATGCCTTGGCTGAAGAGAGTGCGAGACTCACCTCAGTTGCTACAACAAATCTAAATTTCAAGAACGAAGAGGGTATTACTACTAGTGTGATGAACAACAACTCATCACAGGGTGGTTTGGGGCATGGACTACAAAATGTAGCTGGCAATGGAATTCACCAATTTGGTCCACATGGGTCGTTTAGTCTAGATTTTAATGGAATGGGTGCAGAGCAGCAAATTAGGCCAAGCTTATCACTATGGTTGAACCAGGGGAACCCTGGTGTGGGACCAAATTCTGGGATTTATGGTTCATCATGCTCTTCATCAGGTTTGCCTGAGATTGTGCAAATGGGTCATCAGGTTAATAATTCCTTGATTGGCTCTTCTTCAATATTGTCTACTTTTGGAGTGCCTGCTACAAATTCAACAAGTTCAAATCTTTCACTGTCTTCACTACCTATTGGGAAAAGGGGAGAAGGTGGAAATGTAGACTTGGCATGTGTTTATTCTGAGGGTCAAAACAAGCAATCAAGGCCAGCTCCTCCAATGTCTGCCACTGCACTTCTTCAAAAAGCAGCTCAGATGGGTTCCACCAGAAGCACCAACCCTTCCATTTTTAGTGGTAGTTTTGGAGTAATCACTTCACCTTCCTCCCAAACTACCACTCTCAATAGTAATAGTAATACCAATAATAATAGTAATAGTAATAATAATAATAATAATAATAATAATGCCTTTCAGAGTATGAAGCAACCTGAGAATTTTACTTCGACAACTAGCAATGCAGCCATGATGGGAAGTCCTACTAATTTTGGCTCATTGACGCATTCGTCAAACAGTTTTGATCAACTTGTGATGCAAACCAATGGGCAACAAAGTGAGCCAGTGAAATTGAAGCTCCATTCAAACGCTGTGGAACATAGTTTGACAAGAGATTTTCTTGGCGTGAGTGGTGGAGGAGGAGGAGCTGGCCATCAATTCCTTCCCCATGAGCTTGCAAAGTTTGCTTCTATAGGCTCATCAATGGGGTTAACCCAGTTCACAGGCAACCAGTGA 1608 0.4335 MQMMPGDPFSQSTSIGGFSQEQNTNPNPNPKPNPVPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVKKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTSVATTNLNFKNEEGITTSVMNNNSSQGGLGHGLQNVAGNGIHQFGPHGSFSLDFNGMGAEQQIRPSLSLWLNQGNPGVGPNSGIYGSSCSSSGLPEIVQMGHQVNNSLIGSSSILSTFGVPATNSTSSNLSLSSLPIGKRGEGGNVDLACVYSEGQNKQSRPAPPMSATALLQKAAQMGSTRSTNPSIFSGSFGVITSPSSQTTTLNSNSNTNNNSNSNNNNNNNNNAFQSMKQPENFTSTTSNAAMMGSPTNFGSLTHSSNSFDQLVMQTNGQQSEPVKLKLHSNAVEHSLTRDFLGVSGGGGGAGHQFLPHELAKFASIGSSMGLTQFTGNQ 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3379g00026 535 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Gabi3379g00026 535 Pfam Zinc-finger double-stranded RNA-binding 66 88 IPR022755 -
Gabi3379g00026 535 MobiDBLite consensus disorder prediction 401 433 - -
Gabi3379g00026 535 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 509 IPR031140 -
Gabi3379g00026 535 Gene3D Classic Zinc Finger 44 118 - -
Gabi3379g00026 535 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
Gabi3379g00026 535 MobiDBLite consensus disorder prediction 1 26 - -
Gabi3379g00026 535 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
Gabi3379g00026 535 Gene3D Classic Zinc Finger 129 203 - -
Gabi3379g00026 535 MobiDBLite consensus disorder prediction 27 41 - -
Gabi3379g00026 535 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Gabi3379g00026 535 MobiDBLite consensus disorder prediction 441 460 - -
Gabi3379g00026 535 FunFam protein indeterminate-domain 12-like 45 113 - -
Gabi3379g00026 535 SMART c2h2final6 142 162 IPR013087 -
Gabi3379g00026 535 SMART c2h2final6 66 88 IPR013087 -
Gabi3379g00026 535 SMART c2h2final6 107 137 IPR013087 -
Gabi3379g00026 535 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3379g00026 Gabi-Chr3379 501235 503378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3379g00026 1 523 IDZ Gene Family AT5G03150 47.452 1.39e-137 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3379g00026 zf-C2H2_jaz 7.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3379g00026 K25870 - gmx:100811274 689.878