Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3379g00024 ATGAACATGGCAACTGAAGATGAAGGATTTTCCAAGGATGATAACCAAGGCGCTGGAACCATTGAAAATAGAACTCATGTCCCAATTCAAAAGGGTCTAGAGTCATCTGAAATAACTGATGAAGTCTCAAGTGGTCAACATGGAACAAGGCAAAACCTTATCTTGGAGATACCCTCAAGAACTCAGGAGGAAGCAAGAGAAGATTTTTTGAGAATAAACATGCCTCCAACTCCACCTCCAAGAAGAGTGATTTTTTCTCCCAGTCCAAGCCCTGGTTTATCCATAAGCAATGGATCCCCCTCCTCATCAAAAAGTAGATCAACTATTAAAACCCTTCTTCCCAAACTCAGTTTTAAAACTCGGAGCACAAGTTCAGATATTGAAAAGGATGCCTTCTTAGCTCTTGAAGGTTCATCCACAGTGGCACCAAAAAAGCCTCTTCTTTCAAGGACATTATCTCTTATCACACCTAGAGGGAAGAAAACTTCATCCTTACCTGTAAGCCCAAATGCTCATTCAAATCCAGGGTCTGTACATGGAGGGAACATGGCTTCTCCAGCAACAGTTGTTGAGAAAGGACCGCGATTACCAATTCATCGTTCCCGTTCAGTTCCTGAGCTTACCAAAGAAGGTAACACACCTGTAGGTGGCATGTTTCGTATAGTTCTGACCACACCAAGATTGGATGAGAAAGTTGCCACAACAACATCTACGGCATCTCCAACTGATGATAAAGTTGAAAATGAGGATGGTGGTGAAGATATTCCTGAAGAAGAAGCTGTCTGTAGAATTTGTATGATTGAATTGGGAGAAGGAGCTGATACTCTTAAATTGGAGTGCCACTGCAAAGGTGAGCTTTCACTGGCACACCAAGAATGTGCAGTTAAATGGTTCAGCATTAAAGGTAATAGAACATGTGATGTGTGCAAGCAAGAAGTTCAGAACCTACCTGTCACTCTTCTACGAGTTCAATCTGTCCAGGCACAAAACTTGCTTGGGAGCCGAGGTCAGCAAACTGAATACAGGGTTTGGCAGGATGCTCCGGTTCTTGTCATTGCCAACATGGTGGCTTACTTTTGTTTTCTTGAGCAGCTACTTATTAAAAGTATGGGATCTAGTGCTGTTTCCACATCTCTCCCATTGTCTTGTATACTGGGTCTTCTTGCAAGCGTAACAGCTACAACAATGGTTAGGAGAAATCTTGTTTGGGTTTATGCAACTGTTCAGTTTGGTCTGGTGGTTCTCGCTGCACATCTTTTCTACTCATTGACTAGTATGCAAGTTGTTCTGGCTATTCTACTGGCTACGTTTACTGGGTTTGGAGCTGTAATGTGTGGAGCTTCTATTGTTATTGAGATTTTCAATTTGAGGAGAAGATGGCTTGTTCAGTTGAATCAGCAACAACGTTCGCAGGAGGTGGTACCACCTGATCAACCATCTGCAGCCACTCATCAAGCTCAGATTGATTCTCAACTTCCTGAAAGTAATTTGAGAGATTCTCCTGCGCAAAATAGCTGA 1518 0.4262 MNMATEDEGFSKDDNQGAGTIENRTHVPIQKGLESSEITDEVSSGQHGTRQNLILEIPSRTQEEAREDFLRINMPPTPPPRRVIFSPSPSPGLSISNGSPSSSKSRSTIKTLLPKLSFKTRSTSSDIEKDAFLALEGSSTVAPKKPLLSRTLSLITPRGKKTSSLPVSPNAHSNPGSVHGGNMASPATVVEKGPRLPIHRSRSVPELTKEGNTPVGGMFRIVLTTPRLDEKVATTTSTASPTDDKVENEDGGEDIPEEEAVCRICMIELGEGADTLKLECHCKGELSLAHQECAVKWFSIKGNRTCDVCKQEVQNLPVTLLRVQSVQAQNLLGSRGQQTEYRVWQDAPVLVIANMVAYFCFLEQLLIKSMGSSAVSTSLPLSCILGLLASVTATTMVRRNLVWVYATVQFGLVVLAAHLFYSLTSMQVVLAILLATFTGFGAVMCGASIVIEIFNLRRRWLVQLNQQQRSQEVVPPDQPSAATHQAQIDSQLPESNLRDSPAQNS 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3379g00024 505 MobiDBLite consensus disorder prediction 89 108 - -
Gabi3379g00024 505 Pfam RING-variant domain 262 309 IPR011016 GO:0008270
Gabi3379g00024 505 CDD RING_CH-C4HC3_MARCH 262 310 - -
Gabi3379g00024 505 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 317 IPR013083 -
Gabi3379g00024 505 MobiDBLite consensus disorder prediction 1 108 - -
Gabi3379g00024 505 MobiDBLite consensus disorder prediction 16 58 - -
Gabi3379g00024 505 SMART ringv_2 261 310 IPR011016 GO:0008270
Gabi3379g00024 505 MobiDBLite consensus disorder prediction 158 188 - -
Gabi3379g00024 505 ProSiteProfiles Zinc finger RING-CH-type profile. 254 316 IPR011016 GO:0008270
Gabi3379g00024 505 MobiDBLite consensus disorder prediction 230 253 - -
Gabi3379g00024 505 MobiDBLite consensus disorder prediction 471 505 - -
Gabi3379g00024 505 MobiDBLite consensus disorder prediction 158 181 - -
Gabi3379g00024 505 SUPERFAMILY RING/U-box 258 313 - -
Gabi3379g00024 505 PANTHER OS02G0165000 PROTEIN 28 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3379g00024 Gabi-Chr3379 475605 481515 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3379g00024 276 359 C3H Transcription Factor Family AT5G59000 38.889 1.35e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3379g00024 - - gmx:100787963 667.537