Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3379g00023 ATGAACATGGCAACTGAAGATGAAGGATTTTCCAAGGATGATAACCAAGGCGCTGGAACCATTGAAAATAGAACTCATGTCCCAATTCAAAAGGGTCTAGAGTCATCTGAAATAACTGATGAAGTCTCAAGTGGTCAACATGGAACAAGGCAAAACCTTATCTTGGAGATACCCTCAAGAACTCAGGAGGAAGCAAGAGAAGATTTTTTGAGAATAAACATGCCTCCAACTCCACCTCCAAGAAGAGTGATTTTTTCTCCCAGTCCAAGCCCTGGTTTATCCATAAGCAATGGATCCCCCTCCTCATCAAAAAGTAGATCAACTATTAAAACCCTTCTTCCCAAACTCAGTTTTAAAACTCGGAGCACAAGTTCAGATATTGAAAAGGATGCCTTCTTAGCTCTTGAAGGTTCATCCACAGTGGCACCAAAAAAGCCTCTTCTTTCAAGGACATTATCTCTTATCACACCTAGAGGGAAGAAAACTTCATCCTTACCTGTAAGCCCAAATGCTCATTCAAATCCAGGGTCTGTACATGGAGGGAACATGGCTTCTCCAGCAACAGTTGTTGAGAAAGGACCGCGATTACCAATTCATCGTTCCCGTTCAGTTCCTGAGCTTACCAAAGAAGGTAACACACCTGTAGGTGGCATGTTTCGTATAGTTCTGACCACACCAAGATTGGATGAGAAAGTTGCCACAACAACATCTACGGCATCTCCAACTGATGATAAAGTTGAAAATGAGGATGGTGGTGAAGATATTCCTGAAGAAGAAGCTGTCTGTAGAATTTGTATGATTGAATTGGGAGAAGGAGCTGATACTCTTAAATTGGAGTGCCACTGCAAAGGTGAGCTTTCACTGGCACACCAAGAATGTGCAGTTAAATGGTTCAGCATTAAAGGTAATAGAACATGTGATGTGTGCAAGCAAGAAGTTCAGAACCTACCTGTCACTCTTCTACGAGTTCAATCTGTCCAGGCACAAAACTTGCTTGGGAGCCGAGAACTAATGCAAAACTTCTACAGGGTTTGGCAGGATGCTCCGGTTCTTGTCATTGCCAACATGGTGGCTTACTTTTGTTTTCTTGAGCAGCTACTTATTAAAAGTATGGGATCTAGTGCTGTTTCCACATCTCTCCCATTGTCTTGTATACTGGGTCTTCTTGCAAGCGTAACAGCTACAACAATGGTTAGGAGAAATCTTGTTTGGGTTTATGCAACTGTTCAGTTTGGTCTGGTGGTTCTCGCTGCACATCTTTTCTACTCATTGACTAGTATGCAAGTTGTTCTGGCTATTCTACTGGCTACGTTTACTGGGTTTGGAGCTGTAATGTGTGGAGCTTCTATTGTTATTGAGATTTTCAATTTGAGGAGAAGATGGCTTGTTCAGTTGAATCAGCAACAACGTTCGCAGGAGGTGGTACCACCTGATCAACCATCTGCAGCCACTCATCAAGCTCAGATTGATTCTCAACTTCCTGAAAGTAATTTGAGAGATTCTCCTGCGCAAAATAGCTGA 1521 0.4247 MNMATEDEGFSKDDNQGAGTIENRTHVPIQKGLESSEITDEVSSGQHGTRQNLILEIPSRTQEEAREDFLRINMPPTPPPRRVIFSPSPSPGLSISNGSPSSSKSRSTIKTLLPKLSFKTRSTSSDIEKDAFLALEGSSTVAPKKPLLSRTLSLITPRGKKTSSLPVSPNAHSNPGSVHGGNMASPATVVEKGPRLPIHRSRSVPELTKEGNTPVGGMFRIVLTTPRLDEKVATTTSTASPTDDKVENEDGGEDIPEEEAVCRICMIELGEGADTLKLECHCKGELSLAHQECAVKWFSIKGNRTCDVCKQEVQNLPVTLLRVQSVQAQNLLGSRELMQNFYRVWQDAPVLVIANMVAYFCFLEQLLIKSMGSSAVSTSLPLSCILGLLASVTATTMVRRNLVWVYATVQFGLVVLAAHLFYSLTSMQVVLAILLATFTGFGAVMCGASIVIEIFNLRRRWLVQLNQQQRSQEVVPPDQPSAATHQAQIDSQLPESNLRDSPAQNS 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3379g00023 506 MobiDBLite consensus disorder prediction 472 506 - -
Gabi3379g00023 506 MobiDBLite consensus disorder prediction 89 108 - -
Gabi3379g00023 506 Pfam RING-variant domain 262 309 IPR011016 GO:0008270
Gabi3379g00023 506 CDD RING_CH-C4HC3_MARCH 262 310 - -
Gabi3379g00023 506 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 317 IPR013083 -
Gabi3379g00023 506 MobiDBLite consensus disorder prediction 1 108 - -
Gabi3379g00023 506 MobiDBLite consensus disorder prediction 16 58 - -
Gabi3379g00023 506 SMART ringv_2 261 310 IPR011016 GO:0008270
Gabi3379g00023 506 PANTHER OS02G0165000 PROTEIN 28 476 - -
Gabi3379g00023 506 MobiDBLite consensus disorder prediction 158 188 - -
Gabi3379g00023 506 ProSiteProfiles Zinc finger RING-CH-type profile. 254 316 IPR011016 GO:0008270
Gabi3379g00023 506 MobiDBLite consensus disorder prediction 230 253 - -
Gabi3379g00023 506 MobiDBLite consensus disorder prediction 158 181 - -
Gabi3379g00023 506 SUPERFAMILY RING/U-box 258 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3379g00023 Gabi-Chr3379 475605 481518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3379g00023 256 316 C3H Transcription Factor Family AT2G37950 40.323 4.52e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3379g00023 - - gmx:100787963 664.07