Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3379g00018 ATGGGTAACATAGGAAGTAGTGGTCGGAGAAACAGTGGCAGCGCGAGGGGCAGGCGGATTCATCCTCCTCCTCCACCGGTGATTCCGCCGCCGCCGCCGGAAATCACTGCCAGCCGATTCGTGTACCCCGCCGTGGCGGCTACGCCGTATCACAACTATCCCGGTTACTATCCCCCGCCGCCGACAACTTTGCCGGCACCGTACGACCACCATCACCGTCCGGTGATAGACCCAATGGCGGGGCGTTACCCGCCACTGCCGCCGCGACCTGCGCCCTATGTTGAGCATCAGAAGGTGGCTACTATGAAGAACGATGTCAACATCAAGAAGGAGACTCTGAGGATTGAACCTGATGAGGAAAATCCTGGAAGTTTCCTTGTGTCTTTCACGTTTGATGCCACCGCTTCTGGGAGCATCACCATACTTTTCTTTGCAAAAGAAGGTGAAGGTTGCATTATTACTCCAATGAAGGAAAATGTTCTTGCGCCCGTGACAGTAAATTTCCAGCAAGGTCTTGGCCAGAAGTTTAGGCAGCCAGCTGGAACTGGTATTGATTTTTCAAAATTTGAGGAGTCTGAGTTACTGCAAGTGGGTGACATGGATGTCTATCCTGTAGTAGTTAAGGCAGATGCATCCTCTGGCGATCATGAAGGATCAAATGCAACTCCAACATCTGGTAACACAAATTCTCATATAACTCAAGCAGTGTTTGAGAAGGAGAAAGGAGAACTCCAGGTGAAGGTTGTTAAGCAGATCTTGTGGGTGAATGAAATGAGGTATGAGCTGCAGGAGATATATGGTATTGGAAATTCAGTAGAGAGTGACTTGGATGGGAATGACCCAGGAAAAGAGTGCGTTATTTGCTTGTCAGAACCTAGGGACACCACGGTCCTTCCCTGCCGCCACATGTGCATGTGTAGCGGATGTGCAAAGGTTTTGAGGCTCCAGACAAATAGATGTCCAATCTGCAGACAACCAGTTGAGAGGCTTTTGGAGATGAAAGTTGGGCCTGAGCCTGAGGCCGAGCGCAAGCCCGAGCCTGAGGAGTGA 1050 0.5086 MGNIGSSGRRNSGSARGRRIHPPPPPVIPPPPPEITASRFVYPAVAATPYHNYPGYYPPPPTTLPAPYDHHHRPVIDPMAGRYPPLPPRPAPYVEHQKVATMKNDVNIKKETLRIEPDEENPGSFLVSFTFDATASGSITILFFAKEGEGCIITPMKENVLAPVTVNFQQGLGQKFRQPAGTGIDFSKFEESELLQVGDMDVYPVVVKADASSGDHEGSNATPTSGNTNSHITQAVFEKEKGELQVKVVKQILWVNEMRYELQEIYGIGNSVESDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRLQTNRCPICRQPVERLLEMKVGPEPEAERKPEPEE 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3379g00018 349 FunFam probable E3 ubiquitin-protein ligase LOG2 269 334 - -
Gabi3379g00018 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 333 IPR013083 -
Gabi3379g00018 349 PANTHER MAHOGUNIN 1 335 IPR045194 GO:0061630
Gabi3379g00018 349 CDD mRING-HC-C3HC5_MGRN1-like 283 324 IPR045195 -
Gabi3379g00018 349 SUPERFAMILY RING/U-box 284 329 - -
Gabi3379g00018 349 MobiDBLite consensus disorder prediction 19 34 - -
Gabi3379g00018 349 Pfam Zinc finger, C3HC4 type (RING finger) 283 329 - -
Gabi3379g00018 349 MobiDBLite consensus disorder prediction 1 34 - -
Gabi3379g00018 349 ProSiteProfiles Zinc finger RING-type profile. 285 324 IPR001841 -
Gabi3379g00018 349 SMART ring_2 285 323 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3379g00018 Gabi-Chr3379 447388 450331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3379g00018 81 304 C3H Transcription Factor Family AT3G09770 61.111 7.07e-96 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3379g00018 - - gmx:100783831 516.538