Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3379g00013 ATGCGAAGTTTGTGTAGACTTTCTCACTCTTCCATTTTTCTTCTTCTGTTTTTCTTCTGTTATCATGGCACACATGGGTTTGGCACCATGGGACCAATCTCTGCTTCGTTCGGAGAAGACGAGTTGTTCTGTGCAATCGACGCGAGTGGGAAGCAAGATGTGATTTGTTGGGGAAAGAACACAACCTCGCCACCACTTTCATCACAATATTCTTCTTCTTCTTCCTACTTCAGCAACATCCCTGCCATGTCAGCAATTTCCGGCGGCGAAGGGTTTCTCTGTGGCATTTTAGCGAACACCTCCCAAGCATACTGTTGGGGCGCAACCGCGAGGCCCACCGTAGATCTCGTTCTCGTTCCTCCGGCGTACCGGAACATCGCTTACTCCCACATCGCCGCCGGCAAGAACCACGTCTGCGCCGTCAGAGGATCCTACTTCGCCGATCGCGATTCCGGAACCGTGGATTGCTGGGAAATCTCGAGAACCGCGAATGACACGTTGTTGGCCAAGCTGAACGACTCGTTCAACGACCAATCCGCCGGAAATCTAGAGCTGAACCAGATCGTCGCCGGCGAGGGGTTCACCTGCGGCGAGGTCAGAGACGGAGGAGGGCTAGTTTGTTGGGGACCCACTTCGGCGAGCTTGGGCGTTTGGAACGTGTCGGAGAGTTTCACGGTTTTTGCGTCGGGGAGAGGCTCCGTTTGCGGCGTTTCCAACGTTTCCGGCGATTTGAAGTGTTGGGGCGATTCGGGTTCGTATTCGGATCCACCACCCGTTGAGGTTCGGTTGGTGTCTCTCTCTGCTGGGGCTAACCATTTCTGTGGTGTTAGAAAGGATAATCACTTGGTGGAGTGTTGGGGCAGTTTCAATTCCTCTGTGGTTCCTAAAGGTTATGGCTTTATGGCTATTGCTTCTTCGGATTACACCACTTGTGGTATTAGGGAAGATGATCTTCTTTTGGATTGTTGGTTGGTGAATGCTTCAAAGCCTGATTTTGATCCTCCTATGGAGCTTTCTAGTCCTGGTCTTTGCAGGGCTAGTTCTTGTGGTGTTGAAGAATTTGCTTTCAATGTAAGTGTTCTCAATGAGCCAGATTTGACAAGCCTGTGTGTTAGACAGGATTTGAGGATTTGTTCACCTTGTGGGTCAAATTGTTCTCAAGGTTTCTTCTTGTCTAGCCCTTGTACTCGAAACGAGGATAGAGTTTGCACTGCTTGTTCTCTTTGCCAAAACAGTTCTTGCTGGGGTGTTTGTGGTCTTCATTCTTCTGTAGAGATGCATTGGCATCATTTCCGTAGATGGATGATCATAATTGGTTCCTCTGTGTTGGGTTTCTTGCTGATTTTGACTTGTGGGTGTCTTTTGCCACGTTTGACTGCTTGTGGAAAAGCACAAAGGCAGGGGACAAAGAAGCAATCCAAGTCTTGCATTGGTAAACCTGAGCAAGAGGATGATATGAATGTTGGTCTTCACTCTTCTCCTTCTGTTGCTTCATGTCCTGGGCTGCCTCAGGTTTTCAGGCTTTCGGAGTTGAAAGATGCTACAAATGGGTTCAAGGAGTTTAATGAACTTGGTAGGGGAAGTTATGGGTTTGTTTACAAAGCTGCATTGGCAGATGGGAGAGTGGTTGCTGTGAAGAGAGCAAATGCTGCCACAATAATACACACAAATAACCGTGACTTTGAAATGGAGCTTGATGTCCTCTGCAAAATCCGTCATTATAATATTGTAAACTTGTTGGGTTATTGTGCTGAGATGGGGGAGAGGCTGCTTGTTTATGAGTATATGCCTCATGGGACACTTTATGATCACCTCCATGGTGGTCTTTCTCCCCTTAATTGGAGCCTCAGGCTGAAGATAGCTATGCAGGCTGCAAAGGGCATTGAGTACCTTCACAAGGAACTATTGCCTCCAATTGTTCATAAGGATCTCAAAAGTTCAAACATTCTTTTGGATTCAGAGTGGGGGGCTAGAATTTCAGACTTTGGACTTCTTACTTCAAGTGACAAAGATCTTATCGGGGACTTGGAAAGTGATGTTTACAACTTTGGGATTGTATTACTAGAGATTCTAAGTGGAAGGAAGGCTTATGACAGAGATTTTACACTCCCAAACGTTGTTGAGTGGGCAGTGCCTTTGATCAAACAAGGGAAAGCAGCTGCCATAATTGATAGGTCTGTGGCTCTTCCAAGAAATGTTGAGCCTTTGCTTAAGCTTGCTGATATAGCAGAGCTTTCTGTCAGAGAGAATCCAAAGGAGCGTCCACCTATGTCAGAAATAGCATCTTGGTTGGAGCAAATTGTGAAGGACGGGTTGATCTTATAG 2325 0.4697 MRSLCRLSHSSIFLLLFFFCYHGTHGFGTMGPISASFGEDELFCAIDASGKQDVICWGKNTTSPPLSSQYSSSSSYFSNIPAMSAISGGEGFLCGILANTSQAYCWGATARPTVDLVLVPPAYRNIAYSHIAAGKNHVCAVRGSYFADRDSGTVDCWEISRTANDTLLAKLNDSFNDQSAGNLELNQIVAGEGFTCGEVRDGGGLVCWGPTSASLGVWNVSESFTVFASGRGSVCGVSNVSGDLKCWGDSGSYSDPPPVEVRLVSLSAGANHFCGVRKDNHLVECWGSFNSSVVPKGYGFMAIASSDYTTCGIREDDLLLDCWLVNASKPDFDPPMELSSPGLCRASSCGVEEFAFNVSVLNEPDLTSLCVRQDLRICSPCGSNCSQGFFLSSPCTRNEDRVCTACSLCQNSSCWGVCGLHSSVEMHWHHFRRWMIIIGSSVLGFLLILTCGCLLPRLTACGKAQRQGTKKQSKSCIGKPEQEDDMNVGLHSSPSVASCPGLPQVFRLSELKDATNGFKEFNELGRGSYGFVYKAALADGRVVAVKRANAATIIHTNNRDFEMELDVLCKIRHYNIVNLLGYCAEMGERLLVYEYMPHGTLYDHLHGGLSPLNWSLRLKIAMQAAKGIEYLHKELLPPIVHKDLKSSNILLDSEWGARISDFGLLTSSDKDLIGDLESDVYNFGIVLLEILSGRKAYDRDFTLPNVVEWAVPLIKQGKAAAIIDRSVALPRNVEPLLKLADIAELSVRENPKERPPMSEIASWLEQIVKDGLIL 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3379g00013 774 ProSitePatterns Serine/Threonine protein kinases active-site signature. 639 651 IPR008271 GO:0004672|GO:0006468
Gabi3379g00013 774 Gene3D - 29 172 IPR009091 -
Gabi3379g00013 774 ProSiteProfiles Protein kinase domain profile. 518 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3379g00013 774 FunFam serine/threonine-protein kinase-like protein CCR1 487 595 - -
Gabi3379g00013 774 FunFam Serine/threonine-protein kinase-like protein CCR1 673 771 - -
Gabi3379g00013 774 FunFam Serine/threonine-protein kinase-like protein CCR1 596 672 - -
Gabi3379g00013 774 Gene3D Phosphorylase Kinase; domain 1 487 595 - -
Gabi3379g00013 774 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 10 768 - -
Gabi3379g00013 774 SUPERFAMILY Protein kinase-like (PK-like) 493 765 IPR011009 -
Gabi3379g00013 774 SUPERFAMILY RCC1/BLIP-II 36 291 IPR009091 -
Gabi3379g00013 774 SMART serkin_6 518 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3379g00013 774 ProSitePatterns Protein kinases ATP-binding region signature. 524 546 IPR017441 GO:0005524
Gabi3379g00013 774 Gene3D - 173 335 IPR009091 -
Gabi3379g00013 774 Gene3D Transferase(Phosphotransferase) domain 1 596 673 - -
Gabi3379g00013 774 Gene3D Transferase(Phosphotransferase) domain 1 674 771 - -
Gabi3379g00013 774 Pfam Protein tyrosine and serine/threonine kinase 522 668 IPR001245 GO:0004672|GO:0006468
Gabi3379g00013 774 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 348 403 IPR001368 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3379g00013 Gabi-Chr3379 358736 361060 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3379g00013 12 766 Receptor kinase-like Gene Family AT3G59420 31.951 9.00e-115 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Gabi3379g00013 PK_Tyr_Ser-Thr 3.6e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3379g00013 - - gmx:100814476 1248.8