Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3379g00006 ATGGCGGTTTCAATGGACCTCGAGGTAGAACAAATGGAGGTGAAGATGGCATTTCTTCACGGGAACCGAGTTCCCAACAAAAAGGAGATACCTGGTGTGGGAGCAAATTTGTTGGGTCAACACTCAGCGGAGAGGAATCAAGATGCTACTGCTTATGTTGGAAATCTGGACCCTCAGATAACTGAGGAGTTATTGTCGGAGCTGTTTGTTCAGGCAGGTCCAGTGGTAAATGTCTATGTTCCAAAAGACAGAGTGACCACCCAACATCAAGGTTATGGATTTGTTGAATTCCGGACTGAAGAAGATGCTGACTATGCCATCAAGGTGCTTAACATGATTAAACTCTATGGAAAACCAATACGTGTAAATAAGGCATCCCAACTTGATTCTGATGTAGATGAGAAGCTCTTGTATGATGCTTTCAGTGCATTTGGAGTTATTGTTACTAATCCAAAGATCATGAGAGATCCTGAGTCAGGAATTTCCCGTGGTTTTGGCTTCATTAGCTATGATTCATTTGAGGCATCCAATTCAGCTATTGAGTCCAGTGGGCCTCCAACACTTCCCAATGTTGCTCTGGCTAATGGTACCATTGCTGCTCCAGTGCCTCCCTGCCCCTTCGCTAATGGGGTTGCTCCAGCTCATATTCCTGCTCTCCGTTCGCCACCCCCTCAGGCCGTAGCATTCCAGCCAATGCCGGTAGCTGGACAACCAGCATGGAATCAACAACCGCTAGGTCAAGCAATGCTACAACCTGTAATGCCTCCACATCAAATCCAGCAGTTTAGGCCACCTCACTCTAGTATGCAGATGCCACCACCTTCACAAGCTGTTCCGCCTCCTCCAAGGCCTCTTCCACCGCCAACGGTAATGGCAAGCCAACCACCACCTATTTGGCGACCGCCACCCCCACCTCAGCAACAAGGCGGGCGGCCTATGGCATATCCTCAGTCCTCAATGCCACCACCACCTCTCAATAACCCTGGCATGCCGCCACCTTCAAGTTGA 1008 0.4911 MAVSMDLEVEQMEVKMAFLHGNRVPNKKEIPGVGANLLGQHSAERNQDATAYVGNLDPQITEELLSELFVQAGPVVNVYVPKDRVTTQHQGYGFVEFRTEEDADYAIKVLNMIKLYGKPIRVNKASQLDSDVDEKLLYDAFSAFGVIVTNPKIMRDPESGISRGFGFISYDSFEASNSAIESSGPPTLPNVALANGTIAAPVPPCPFANGVAPAHIPALRSPPPQAVAFQPMPVAGQPAWNQQPLGQAMLQPVMPPHQIQQFRPPHSSMQMPPPSQAVPPPPRPLPPPTVMASQPPPIWRPPPPPQQQGGRPMAYPQSSMPPPPLNNPGMPPPSS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3379g00006 335 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Gabi3379g00006 335 CDD RRM1_SF3B4 52 124 IPR034158 -
Gabi3379g00006 335 PRINTS Proline rich extensin signature 217 233 - -
Gabi3379g00006 335 PRINTS Proline rich extensin signature 273 289 - -
Gabi3379g00006 335 PRINTS Proline rich extensin signature 293 310 - -
Gabi3379g00006 335 PRINTS Proline rich extensin signature 252 273 - -
Gabi3379g00006 335 PRINTS Proline rich extensin signature 312 335 - -
Gabi3379g00006 335 Gene3D - 12 124 IPR012677 -
Gabi3379g00006 335 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 121 IPR000504 GO:0003723
Gabi3379g00006 335 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 127 181 IPR000504 GO:0003723
Gabi3379g00006 335 SUPERFAMILY RNA-binding domain, RBD 49 181 IPR035979 GO:0003676
Gabi3379g00006 335 Gene3D - 126 196 IPR012677 -
Gabi3379g00006 335 FunFam Splicing factor 3b subunit 4 40 132 - -
Gabi3379g00006 335 PANTHER SPLICING FACTOR 3B SUBUNIT 4 38 181 - -
Gabi3379g00006 335 MobiDBLite consensus disorder prediction 258 335 - -
Gabi3379g00006 335 SMART rrm1_1 50 123 IPR000504 GO:0003723
Gabi3379g00006 335 SMART rrm1_1 126 192 IPR000504 GO:0003723
Gabi3379g00006 335 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 196 IPR000504 GO:0003723
Gabi3379g00006 335 MobiDBLite consensus disorder prediction 267 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3379g00006 Gabi-Chr3379 129748 136680 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3379g00006 42 182 Eukaryotic Initiation Factors Gene Family AT4G34110 30.435 1.21e-13 70.1