Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3379g00005 ATGATTACATTTATGGATTCAAAGGAGAAATCAAAAGAGGAGGAAAGGTGTTTGGATCCTCAGCTATGGCATGCCTGTGCAGGTGGGATGGTGCAGATGCCAGTTGTGAATAGTAAGGTATATTACTTCCCTCAGGGCCATGCTGAACATGCATGTGGACCTGTTAACTTCAGGAATTGCCCCAAGGTTCCGCCTATGGTTCCGTGCAGAGTGGCAGCTATCAAATACATGGCTGATCCTGAAACAGATGAGGTTTATGCTAAACTAAGGCTTGTCCCTTTGAGTAGCAATGATGTTGATTATGACCAAGATGTTGTTGGGGGCATCAATGGGTCTGAAACTCAGGACAAGCCTGCTTCATTTGCAAAAACCTTGACACAATCGGATGCAAACAATGGTGGAGGGTTTTCTGTTCCTAGATATTGTGCTGAGACAATTTTTCCTCGTTTGGACTATTCAGCAGACCCTCCTGTCCAAAACATCCTTGCAAAGGATGTTCATGGTGAAACATGGAAATTCAGGCACATTTATAGGGGCACGCCAAGGCGGCATCTGTTGACTACTGGGTGGAGTACTTTTGTCAATCACAAGAAGCTTATTGCTGGGGACTCAATTGTGTTTTTGAGAGCAGATAATGGGGATCTTTGTGTTGGAATTCGGCGAGCGAAAAAGGGTGTTCATGATGGATCTGAGGCTTCCTCAGGGTGGAATCCTGCAGGAGGAAATTGTCAAGTTCCTTATGGTGGATTTTCAGCATTTTTGAGGGAGGATGATGACAGAATCATGAGAAATGGTAACGGGAATGGATTGAACCCATGTGCGAATATGATGGGCAAGGCAAAAGTGAGGCCAGAAGCAGTTATTGAAGCTGCAAATCTTGCTGCCAATAAGCAACCTTTTGAGGTTGTTTACTACCCTCGGGCAAGTACTCCAGAGTTTTGTGTGAAGGACTCGTTGGTTGAAGCAGCACTGCAGATTAGGTGGTGTGCTGGAATAAGGTTCAAGATGGCCTTTGAAACTGAGGATTCCTCGCGGATAAGTTGGTTTATGGGAACCATATCTTCAGTTCAAGTTGCTGATCCCCTTGGCTGGCCTAACTCACCTTGGAGGCTTCTTCAGGTTACATGGGATGAGCCAGATTTACTTCAAAACGTGAGAAGGGTGAGCCCTTGGTTGGTTGAATTGGTATCAAACATGCCAGCCATCCATCTTTCCCCTTTCTCACCACCGCGGAAGAAATTGAGATTGCCACAATACCCAGATTTCCCCCTTGATGGCCAGATTCCTCTGCCAACATTTCCCAACAACCTTCTAGGTCCCAGCAACCCATTCGGTTATCTATCCGAAAGTACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTATGGTATATCTTTATCAGATCTCCACGTCAATAAAGTGAATTCAGGTCTATTTCCGGCCGGTTTCCCGCCTCTTGATCACACTGCTACACCAATGAGGGTCTCAAATAACCTAATATTTCAAAAGCCCAGCATGAGTGAGAATGTCTCTTGCTTACAATCCATGACAAATTCTACTCAGTCTTCAAAGAAACTGGATGATGGGAAGAAACCCCAGCTTGTGCTTTTTGGCCAAAAAATTCTCACTGAGCAGCAGATATCATCTTTGAGCAGCTCTGGTGATACACATTCCCCAGTTCTTACTGGAAATTGTTCATCAGATGGAAATGCTGACAAAGTGACTAATTTTTCTGATGGTTCCGGATCTGCTTTTCATCAGCAAGGCCTACACGAGCGCGCCTCTTGTGAGAGGTTTCAGTGGTATAGGGATAATCGCCAAGAATCTGAAGCCCGTTTGGAGATGGGTCACTGTAAAGTTTTTATGGAATCAGAAGATATAGGTCGGACTATGGACCTCTCTTTGCTTGGATCTTATGATGAACTGTACAAAAAGCTGACAGACATGTTTGGCATAGAAAAATCTGAGATGCTAAGTCATGTGGTTTACCGCGATATAACTGGAGCAGTCAAACACATTGGAGATCAACCATTCAGCAACTTCACAAGAACAGCGAGGAGGTTGACTATTCTAATGGATTCCAGCAGTGACAATGTAGGAGTGTAA 2109 0.449 MITFMDSKEKSKEEERCLDPQLWHACAGGMVQMPVVNSKVYYFPQGHAEHACGPVNFRNCPKVPPMVPCRVAAIKYMADPETDEVYAKLRLVPLSSNDVDYDQDVVGGINGSETQDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLIAGDSIVFLRADNGDLCVGIRRAKKGVHDGSEASSGWNPAGGNCQVPYGGFSAFLREDDDRIMRNGNGNGLNPCANMMGKAKVRPEAVIEAANLAANKQPFEVVYYPRASTPEFCVKDSLVEAALQIRWCAGIRFKMAFETEDSSRISWFMGTISSVQVADPLGWPNSPWRLLQVTWDEPDLLQNVRRVSPWLVELVSNMPAIHLSPFSPPRKKLRLPQYPDFPLDGQIPLPTFPNNLLGPSNPFGYLSESTPAGMQGARHAHYGISLSDLHVNKVNSGLFPAGFPPLDHTATPMRVSNNLIFQKPSMSENVSCLQSMTNSTQSSKKLDDGKKPQLVLFGQKILTEQQISSLSSSGDTHSPVLTGNCSSDGNADKVTNFSDGSGSAFHQQGLHERASCERFQWYRDNRQESEARLEMGHCKVFMESEDIGRTMDLSLLGSYDELYKKLTDMFGIEKSEMLSHVVYRDITGAVKHIGDQPFSNFTRTARRLTILMDSSSDNVGV 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3379g00005 702 Pfam Auxin response factor 290 373 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gabi3379g00005 702 SUPERFAMILY DNA-binding pseudobarrel domain 115 223 IPR015300 -
Gabi3379g00005 702 SMART B3_2 121 223 IPR003340 GO:0003677
Gabi3379g00005 702 Gene3D - 613 700 - -
Gabi3379g00005 702 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 694 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gabi3379g00005 702 FunFam Auxin response factor 119 223 - -
Gabi3379g00005 702 Gene3D - 119 223 IPR015300 -
Gabi3379g00005 702 CDD B3_DNA 120 221 IPR003340 GO:0003677
Gabi3379g00005 702 Pfam B3 DNA binding domain 121 222 IPR003340 GO:0003677
Gabi3379g00005 702 Gene3D - 327 401 - -
Gabi3379g00005 702 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
Gabi3379g00005 702 ProSiteProfiles PB1 domain profile. 616 699 IPR000270 GO:0005515
Gabi3379g00005 702 FunFam Auxin response factor 328 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3379g00005 Gabi-Chr3379 101247 105493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3379g00005 15 702 B3 DNA Binding Superfamily AT4G30080 56.734 0.0 747
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gabi3379g00005 B3 6.4e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3379g00005 - - gmx:100796522 1236.48