Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3376g00001 ATGGAAAGTTCTTTTCAAAATCACGATTGGAATCTGATTAATACTCACAGCAGCAACGAAATTCCCAAGGTTGCAAATTTTCTTGGTGTGAGAAAGTTTGAAAATCAGTCAGATCTTGCAGCCTTTAATGAAATTCAGTCAAATGATTTAGATCATTACATGTTCACGAACAATAGTCTCGTGCCAATGCAAAACTTGGTGGTACCCGCTTCAAGCAATTATGAGTATCAAGAAAATGCTAACAATAATCTGCAGTCATTGACATTGTCCATGGGAAGTGGTAAGGGTTCAACATGCGAAACCACCAGTGGTGATAATAGTACAAACAGTACTACTGTTGAAGCTGCACCTAAAAGAGCATTGGATACCTTTGGGCAGAGAACATCAATATATCGCGGTGTGACTAGACATAGATGGACTGGAAGGTATGAAGCTCACCTATGGGATAATAGCTGTAGAAGGGAAGGACAATCAAGAAAAGGTCGACAAGGTGGGTATGACAAGGAAGACAAAGCAGCGAGATCTTATGATTTAACTAGTATAAGATATATATTTTTGAACGTAATACTTTGCAGCTCATATAGTTCAATTTTCTAA 597 0.3802 MESSFQNHDWNLINTHSSNEIPKVANFLGVRKFENQSDLAAFNEIQSNDLDHYMFTNNSLVPMQNLVVPASSNYEYQENANNNLQSLTLSMGSGKGSTCETTSGDNSTNSTTVEAAPKRALDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEDKAARSYDLTSIRYIFLNVILCSSYSSIF 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3376g00001 198 SMART rav1_2 130 188 IPR001471 GO:0003700|GO:0006355
Gabi3376g00001 198 ProSiteProfiles AP2/ERF domain profile. 130 195 IPR001471 GO:0003700|GO:0006355
Gabi3376g00001 198 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 39 183 - -
Gabi3376g00001 198 Pfam AP2 domain 130 183 IPR001471 GO:0003700|GO:0006355
Gabi3376g00001 198 SUPERFAMILY DNA-binding domain 129 184 IPR016177 GO:0003677
Gabi3376g00001 198 Gene3D AP2/ERF domain 130 187 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3376g00001 Gabi-Chr3376 13543 22896 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3376g00001 115 189 AP2-EREBP Transcription Factor Family AT1G51190 32.000 2.60e-06 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gabi3376g00001 AP2 8.8e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3376g00001 K09285 - gmx:100788471 295.819