LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3374g00022	ATGAATAGGGGAATTGAAGTTCTCTCTCCAGCCTCCTATCTCCAAAATTCAAATTGGTTGTTCCAGGAAAGCAAAGGAGCCAAATGGACTCCACAAGAGAACAAACTGTTTGAGAATGCCTTGGCCTTTTTTGATAAGGACACCCCTGATCGATGGATGAGGGTGGCAGCCATGATTCCAGGCAAAACTGTAGGCGATGTGATTAAACAGTACAAAGAACTTGAAGAAGATGTGAGTGTCATTGAAGCAGGTTTGATCCCAGTTCCTGGGTATAGTACTAGTTCTTTCACATTGGAGTGGGCTAATGAACAAGGCTATGATGGGTTCAAGCAATTTTATAGTGTTGGTGATAAAAGGGGTGCTTCCACTCGGCCATCTGAGCAGGAAAGAAAGAAAGGAGTGCCATGGACTGAAGAGGAGCACAGGCTATTTCTGCTTGGTCTCAAAAAGTATGGTAAAGGGGACTGGAGAAATATTTCTAGGAATTTTGTGACAACAAGGACACCAACTCAGGTTGCAAGTCATGCTCAAAAGTATTTCATAAGGCAACTTACAGGAGGGAAGGATAAGAGGAGATCCAGTATCCATGATATCACAATGGTTAATCTACCAGAAACAGAAACTCCTTCATCAGACAGTAACAGGCCTTCTTCTCCTGATCACTCAGTTAAGGTTGTGAATCCACAGCAGAATCAGAAATTTTCTTGCATGCTTAAACAAGAATATGACTGGAAATTACCACACAAAGGCATGCCAATTGTTTTCAACTCAACAAATAGAAACATGTTCATGGCACCATTGCATGGGATTTCTTCATGTGAATCTAAGCCACAGGAGCATAATTTACTCAGAGGCACTCTCCATGGGTGCCAGTTTTCACCTTACGATAATATCTTGCAAATGCAACCAATGCAACATCAATGA	924	0.4188	MNRGIEVLSPASYLQNSNWLFQESKGAKWTPQENKLFENALAFFDKDTPDRWMRVAAMIPGKTVGDVIKQYKELEEDVSVIEAGLIPVPGYSTSSFTLEWANEQGYDGFKQFYSVGDKRGASTRPSEQERKKGVPWTEEEHRLFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLTGGKDKRRSSIHDITMVNLPETETPSSDSNRPSSPDHSVKVVNPQQNQKFSCMLKQEYDWKLPHKGMPIVFNSTNRNMFMAPLHGISSCESKPQEHNLLRGTLHGCQFSPYDNILQMQPMQHQ	307

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3374g00022	307	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	131	183	IPR006447	GO:0003677
	Gabi3374g00022	307	FunFam	transcription factor MYB1R1	134	185	-	-
	Gabi3374g00022	307	MobiDBLite	consensus disorder prediction	191	230	-	-
	Gabi3374g00022	307	SUPERFAMILY	Homeodomain-like	28	82	IPR009057	-
	Gabi3374g00022	307	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	128	184	IPR017930	-
	Gabi3374g00022	307	SMART	sant	25	77	IPR001005	-
	Gabi3374g00022	307	SMART	sant	132	182	IPR001005	-
	Gabi3374g00022	307	ProSiteProfiles	Myb-like domain profile.	128	180	IPR001005	-
	Gabi3374g00022	307	CDD	SANT	135	180	IPR001005	-
	Gabi3374g00022	307	Pfam	Myb-like DNA-binding domain	135	180	IPR001005	-
	Gabi3374g00022	307	CDD	SANT	28	74	IPR001005	-
	Gabi3374g00022	307	Gene3D	-	21	88	-	-
	Gabi3374g00022	307	FunFam	Transcription factor SRM1	21	88	-	-
	Gabi3374g00022	307	Gene3D	-	134	184	-	-
	Gabi3374g00022	307	SUPERFAMILY	Homeodomain-like	129	183	IPR009057	-
	Gabi3374g00022	307	PANTHER	DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED	23	261	IPR043363	-
	Gabi3374g00022	307	ProSiteProfiles	SANT domain profile.	136	184	IPR017884	-
	Gabi3374g00022	307	MobiDBLite	consensus disorder prediction	199	230	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3374g00022	Gabi-Chr3374	289460	292379	Dispersed/Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Gabi3374g00022		Myb_DNA-binding	4e-12	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3374g00022	-		-	var:108329798	496.893