Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3374g00004 ATGTTCCCTTTTCCAATTCTTCAGTTCATGAAGCTCATACCATTTTGGAAGCTTCTTGTAGTGTGCTTTTGTGCAATGTTAATGGCCTTTTCTTCTGATGTTGCTGCTGCTTCAGCCACGTTACAAAGCAGAGAAGCAAATGCTTTGTTGAAATGGAAAGCCAGCCTTCACAACCAAACCCAGGCTTTGCTATCTTCATGGACGGGCAATAGTCCTTGCAATAATTGGCTCGGAATTGAGTGTGACGTGTCCATGTCTGTCGCCAACATTAATCTTACAAATATTGGATTAAGAGGTACGCTTCAATGTCTCAACTTCACTTTACTTCCAAACATCCTCACTCTAAACATGAGTCTCAACTCCCTAAATGGAAGTATTCCTCCCCATATTGGGGTATTGTCCAAACTCTCCAGTCTTGATCTCAGTGACAATCATCTGACAGGAACAATTCCATCTGAAATAACACAGTTGTCAGGTCTTCGTACTTTAGACTTGGCTAATAATGTTTTCAGTGGTTCCATTCCTCAGGAAATAGGTGCATTAAGGAATTTGAGAGAGCTTAGTATTGAATGGGCCAATCTCACAGGGACTATCCCAATTTCTGTAGGAAAGCTAACCTTCTTGTCACGTTTTGATGTAGGAGGTAACAACCTTTCTGGCAACATTCCAAATGAAATTTGGAATTTGAGCAACTTAGAGTATTTAGCGCTTTGCATAAATAACTTTAATTTTTCAATTCCCCAAGAAATTGTGAAGTTGCAAAAGCTGGAGAGTCTACTTCTTTCGGAAAGTGGTCTTACCGGTCCCATCCCTGAAGAACTGTGGAAGTTGGGAAATCTAACATTGCTTCAGGTAGCAAGTTGCAACATCACAGGGTCTATCCCAATTTCAATAGAAAATTTGGCCAAACTCTCATATCTTGATCTCAGTCACAATCATCTCACAGGAACAATTCCATCTGAAATAACACAGTTGTCAGGTCTTCGTACTTTAGATTTGGCTGGTAACGTTTTCAGTGGTTCCATTCCTCAGGAAATAGGTGCATTAAGGAATTTGAGAGAGCTTAGCATTGAATGGGCCAATCTCACAGGGACTATACCAATTTCCGTAGGGAAGCTTGCTTTCTTGTCACGTTTTGATGTAGGAGGTAACAACCTTTATGACAACATTCCAAATGAAATTGGGAATTTGACCAACTTAGAGTATTTAGCGCTTTGCATAAATAACTTTAATGGTTCCATTCCTCAAGAAATTGGGAAGTTGCAAAAGCTAGAGAGTCTACTTCTTTCGGAAAGTGGTCTTACCGGTCCCATCCCCGAAGAACTGTGGAAGTTGGGAAATCTAACATTGCTTCAGTTAGAAAGTTTCAACATCACAGGCCCTATCCCAATTTCTATAGTAAATTTGACCAAAATGTCAATTCTAGATTTTGGAAACAACAAACTTTCTGGCTACATTCCTCAAGAAATTGGAATGATGAAAAATATGTCTGAACTTGATTTGTCCAATAACTATCTCTTTGGTGCAATACCCTCCACAATTGGAAACTTGAGCAATTTACAGTGGCTTTACCTTTATTCCAACTATCTCTCTGGTCGCATTCCCGATGAAGTTGGAAAACTCTATTCTCTTTCCACAATCCAATTGTTAAATAACAGCCTCTCCGGGCCAATCCCATCTTCCATAGGTAACTTGCTCAATTTGGTTTCCATCCGCCTTGATGGAAATAAACTCTCTGGTCCAATTCCTTCCACCATTGGAAACTTGACAAAGGTCACTATACTAAATTTATTCTCAAATGAACTCAGTGGCAACATTCCAATTGAAATGAACAGGCTTACTAATTTGGAAAAATTGCAAATAGATAATAATAACTTTATGGGTCATTTGCCTCACAACATTTGTGTTAGTGGAAAGTTGACAAACTTTACTGCTTTCAATAACCATTTTACTGGCCCCGTTCCAAAGAGTTTGAAGAATTGCTCAAGCCTTATAAGACTTCGGCTGCAACTAAACCAACTGACTGGAAATATAACAGATGATTTTGGTGTATATCCAAAGTTGGACTACATCGAATTGAGTGACAATAATTTTTACGGTCACATTTCGCCAAATTGGGGAAAGTGCTACAGCCTCCAAAGCCTCAAGATCTCCAACAATAATTTATCTGGTGTCATACCACCAGAACTAGGCGAGGCAATCAAATTACATGTACTTGACTTATCTTCAAACCATCTCACTGGAAAAATTCCAAACGAGTTAGATACTTTGACTTCACTGATCAAACTCTTGATAAGCAACAATCATCTTTCAGGAAATATCCTTGTACAAATAGCCTCATTGCAGGAACTTGATACCTTGGAGCTTGCAGCAAATAGTTTTAGTGGATTAATCACTGAACAACTTGCAAGGTTGCCTAAGTTATTGAACTTGAATTTGAGCCAAAATAAATTTAAGGGAAATATTCCTCTTGAGTTTGCCCATTTCAAAGTTCTTCGAAGTCTTGATCTTAGCAGAAATTTTTTGGGCGGGACAATACCTTCCATGCTTGGAGATCTTATATACTTAGAAATATTGAATCTCTCACATAATAATCTTTTTGGTATCATTCCCTCCAGCTTTGAAGGTATGTTAAGCTTGACAATTATTGATATATCATACAACCAATTAGAGGGTCCACTTCCAAATGCTCAAGCATTTCATAAGGCTACAATTGAAGCTTTCATAAATAATAAAGGCTTGTGTGGTAATGTCTCTGGCTTAAAACCTTGTCCTTCATCAAGTGGCATATCTCATCATCATAAGACCAACATGGTTATATTGGTGGTTTTACCCCTTACTTTGGGCATTATACTTCTAGTACTATTTGTTATCGGGGTGTCTTATCATCTCTGTCATTCTTCAAGCTCAAAAGAAAACCAAGATGAAGAATCTCAAGCTCAAAATCTATTTGCAATATGGAGTTTTGATGGAAAAATGGTGTATGAGAATATTATTGAAGCCACAGAAGAGTTTGACAACAAACATCTTATTGGGGTTGGAGGGCATGCAAGTGTTTACAAAGCAGAGTTGCCCACAGGTGAAGTTGTTGCTGTGAAGAAACTCCATTCAGCACCAAATAAAGAAATCTCCAATCCAAAAGCTTTCACTAGTGAGATCCAAGCTTTGACAGAAATTCGACATCGTAACATTGTCAAGTTATATGGGTTTTGTTCTCATTCACGACACTCATTTCTGGTTTATGAGTTCTTGGAGAAGGGTAGTGTGGGGATGATTTTGAAAAATGATAAACAAGCAACTGAATTTGATTGGGATAGGAGGGTGAATGTAGTTAAAGGCGTAGCTAATGCTTTATGCTATATGCACCATGATTGCTCGCCTCCAATTGTCCATCGAGATATATCAAGCAAGAATGTTCTTTTGGATTTGGAATATGTGGCTCATGTCTCTGACTTCGGAACTGCTAGGCTCCTCAATCCTAATTCAAGCAACTGGACCTCATTTGCAGGAACCTTTGGATATGCTGCTCCAGAACTTGCGTACACAATGGAAATAAATGAGAAGTGTGATGTGTATAGTTTTGGAGTATTAGCATTGGAAATACTTTTTGGAAAGCACCCCGGTGATGTTATGTCTTCTTCATGGATTGTTATGGCCTCAACATTTGATAATATGTTGTTGATGGATAAGTTGGACCAACGTCTCCCTCATCCTGTGAAGGATGTATTATCAATTGCAAGGATAGCAATTGCTTGCTTGAGTGAAAGCTCAGGCTCTCGCCCTACCATGAAGCAGGTTGTTAAGGAGCTTGCATTGTCAGACTGA 3825 0.3877 MFPFPILQFMKLIPFWKLLVVCFCAMLMAFSSDVAAASATLQSREANALLKWKASLHNQTQALLSSWTGNSPCNNWLGIECDVSMSVANINLTNIGLRGTLQCLNFTLLPNILTLNMSLNSLNGSIPPHIGVLSKLSSLDLSDNHLTGTIPSEITQLSGLRTLDLANNVFSGSIPQEIGALRNLRELSIEWANLTGTIPISVGKLTFLSRFDVGGNNLSGNIPNEIWNLSNLEYLALCINNFNFSIPQEIVKLQKLESLLLSESGLTGPIPEELWKLGNLTLLQVASCNITGSIPISIENLAKLSYLDLSHNHLTGTIPSEITQLSGLRTLDLAGNVFSGSIPQEIGALRNLRELSIEWANLTGTIPISVGKLAFLSRFDVGGNNLYDNIPNEIGNLTNLEYLALCINNFNGSIPQEIGKLQKLESLLLSESGLTGPIPEELWKLGNLTLLQLESFNITGPIPISIVNLTKMSILDFGNNKLSGYIPQEIGMMKNMSELDLSNNYLFGAIPSTIGNLSNLQWLYLYSNYLSGRIPDEVGKLYSLSTIQLLNNSLSGPIPSSIGNLLNLVSIRLDGNKLSGPIPSTIGNLTKVTILNLFSNELSGNIPIEMNRLTNLEKLQIDNNNFMGHLPHNICVSGKLTNFTAFNNHFTGPVPKSLKNCSSLIRLRLQLNQLTGNITDDFGVYPKLDYIELSDNNFYGHISPNWGKCYSLQSLKISNNNLSGVIPPELGEAIKLHVLDLSSNHLTGKIPNELDTLTSLIKLLISNNHLSGNILVQIASLQELDTLELAANSFSGLITEQLARLPKLLNLNLSQNKFKGNIPLEFAHFKVLRSLDLSRNFLGGTIPSMLGDLIYLEILNLSHNNLFGIIPSSFEGMLSLTIIDISYNQLEGPLPNAQAFHKATIEAFINNKGLCGNVSGLKPCPSSSGISHHHKTNMVILVVLPLTLGIILLVLFVIGVSYHLCHSSSSKENQDEESQAQNLFAIWSFDGKMVYENIIEATEEFDNKHLIGVGGHASVYKAELPTGEVVAVKKLHSAPNKEISNPKAFTSEIQALTEIRHRNIVKLYGFCSHSRHSFLVYEFLEKGSVGMILKNDKQATEFDWDRRVNVVKGVANALCYMHHDCSPPIVHRDISSKNVLLDLEYVAHVSDFGTARLLNPNSSNWTSFAGTFGYAAPELAYTMEINEKCDVYSFGVLALEILFGKHPGDVMSSSWIVMASTFDNMLLMDKLDQRLPHPVKDVLSIARIAIACLSESSGSRPTMKQVVKELALSD 1274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3374g00004 1274 FunFam LRR receptor-like serine/threonine-protein kinase 467 538 - -
Gabi3374g00004 1274 SUPERFAMILY RNI-like 304 630 - -
Gabi3374g00004 1274 Gene3D Phosphorylase Kinase; domain 1 965 1083 - -
Gabi3374g00004 1274 FunFam Uncharacterized protein 296 386 - -
Gabi3374g00004 1274 Gene3D Transferase(Phosphotransferase) domain 1 1084 1274 - -
Gabi3374g00004 1274 Pfam Leucine rich repeat 279 336 IPR001611 GO:0005515
Gabi3374g00004 1274 Pfam Leucine rich repeat 783 840 IPR001611 GO:0005515
Gabi3374g00004 1274 Pfam Leucine rich repeat 135 191 IPR001611 GO:0005515
Gabi3374g00004 1274 Pfam Leucine rich repeat 856 892 IPR001611 GO:0005515
Gabi3374g00004 1274 Gene3D Ribonuclease Inhibitor 616 927 IPR032675 -
Gabi3374g00004 1274 Gene3D Ribonuclease Inhibitor 496 615 IPR032675 -
Gabi3374g00004 1274 ProSiteProfiles Leucine-rich repeat profile. 735 758 IPR001611 GO:0005515
Gabi3374g00004 1274 Gene3D Ribonuclease Inhibitor 294 393 IPR032675 -
Gabi3374g00004 1274 Gene3D Ribonuclease Inhibitor 416 495 IPR032675 -
Gabi3374g00004 1274 PANTHER LEUCINE RICH REPEAT KINASE 2 562 1270 - -
Gabi3374g00004 1274 SUPERFAMILY Protein kinase-like (PK-like) 988 1270 IPR011009 -
Gabi3374g00004 1274 FunFam Leucine-rich repeat receptor protein kinase MSP1 968 1083 - -
Gabi3374g00004 1274 FunFam Leucine-rich receptor-like protein kinase family protein 539 632 - -
Gabi3374g00004 1274 SMART LRR_sd22_2 469 484 - -
Gabi3374g00004 1274 SMART LRR_sd22_2 301 330 - -
Gabi3374g00004 1274 SMART LRR_sd22_2 565 591 - -
Gabi3374g00004 1274 SMART LRR_sd22_2 133 162 - -
Gabi3374g00004 1274 SMART LRR_sd22_2 493 519 - -
Gabi3374g00004 1274 SMART LRR_typ_2 613 637 IPR003591 -
Gabi3374g00004 1274 SMART LRR_typ_2 325 349 IPR003591 -
Gabi3374g00004 1274 SMART LRR_typ_2 493 516 IPR003591 -
Gabi3374g00004 1274 SMART LRR_typ_2 853 876 IPR003591 -
Gabi3374g00004 1274 SMART LRR_typ_2 205 229 IPR003591 -
Gabi3374g00004 1274 SMART LRR_typ_2 301 324 IPR003591 -
Gabi3374g00004 1274 SMART LRR_typ_2 133 156 IPR003591 -
Gabi3374g00004 1274 SMART LRR_typ_2 805 828 IPR003591 -
Gabi3374g00004 1274 SMART LRR_typ_2 397 421 IPR003591 -
Gabi3374g00004 1274 SMART LRR_typ_2 157 181 IPR003591 -
Gabi3374g00004 1274 SMART LRR_typ_2 517 541 IPR003591 -
Gabi3374g00004 1274 SMART LRR_typ_2 565 589 IPR003591 -
Gabi3374g00004 1274 Gene3D Ribonuclease Inhibitor 197 293 IPR032675 -
Gabi3374g00004 1274 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1129 1141 IPR008266 GO:0004672|GO:0006468
Gabi3374g00004 1274 SUPERFAMILY RNI-like 89 411 - -
Gabi3374g00004 1274 FunFam Leucine-rich repeat receptor protein kinase EMS1 200 295 - -
Gabi3374g00004 1274 Gene3D Ribonuclease Inhibitor 43 196 IPR032675 -
Gabi3374g00004 1274 Pfam Leucine Rich Repeat 735 755 IPR001611 GO:0005515
Gabi3374g00004 1274 SUPERFAMILY RNI-like 535 893 - -
Gabi3374g00004 1274 FunFam Nuclear pore complex protein NUP107 42 199 - -
Gabi3374g00004 1274 ProSitePatterns Protein kinases ATP-binding region signature. 1011 1034 IPR017441 GO:0005524
Gabi3374g00004 1274 ProSiteProfiles Protein kinase domain profile. 1005 1272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3374g00004 1274 ProSiteProfiles Leucine-rich repeat profile. 855 876 IPR001611 GO:0005515
Gabi3374g00004 1274 FunFam Uncharacterized protein 635 933 - -
Gabi3374g00004 1274 PRINTS Leucine-rich repeat signature 136 149 - -
Gabi3374g00004 1274 PRINTS Leucine-rich repeat signature 301 314 - -
Gabi3374g00004 1274 Pfam Protein kinase domain 1006 1268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3374g00004 1274 Pfam Leucine rich repeat N-terminal domain 44 82 IPR013210 -
Gabi3374g00004 1274 ProSiteProfiles Leucine-rich repeat profile. 303 325 IPR001611 GO:0005515
Gabi3374g00004 1274 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 387 461 - -
Gabi3374g00004 1274 FunFam MDIS1-interacting receptor like kinase 2 1084 1274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3374g00004 Gabi-Chr3374 134485 138759 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3374g00004 229 803 Receptor kinase-like Gene Family AT4G08850 31.130 8.62e-71 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi3374g00004 Pkinase 8.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3374g00004 - - vvo:131634792 1318.91