Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3373g00056 ATGAGTTTCAATTCATCAGGGCTGCATGGAACGACTACCGCAAATGAGCACAAGAAGTTTAAGGGAGTTCGGCGACGAAAATGGGGCAAATGGGTATCGGAGATTCGTGTGCCTGGCACGCAAGAACGCCTCTGGTTGGGTACATATGCCACACCGGAGGCTGCAGCTGTGGCTCACGACGTAGCTGTGTATTGTCTGAGGAGTCCTTCGAAGTTGGACAGACTTAACTTCCCTGAGACTTTGTCTTACTATTGTGTTCAGCAAAGGGACATGTCTCCCAGGTCTGTTCAGAAGGTGGCTTCGGATGCTGGCATGGATGTTGATGCCCGCAACATTGCTGGCAAAACATCACCGGTGGCAGAAACTTACGAAAATGAAAAGAAAACTGATACTGATCATTCTCTTGATGTGTTTTGGTGGGAAGGTTTAGGGGATGACTGTGGGACTTGGCAAGGAACTGAAGATTATAGAGAAGGGGAGGCCTTGAGCATTTCCATTGAAGATTATCTTTAG 513 0.4795 MSFNSSGLHGTTTANEHKKFKGVRRRKWGKWVSEIRVPGTQERLWLGTYATPEAAAVAHDVAVYCLRSPSKLDRLNFPETLSYYCVQQRDMSPRSVQKVASDAGMDVDARNIAGKTSPVAETYENEKKTDTDHSLDVFWWEGLGDDCGTWQGTEDYREGEALSISIEDYL 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3373g00056 170 MobiDBLite consensus disorder prediction 1 21 - -
Gabi3373g00056 170 ProSiteProfiles AP2/ERF domain profile. 19 78 IPR001471 GO:0003700|GO:0006355
Gabi3373g00056 170 Pfam AP2 domain 19 67 IPR001471 GO:0003700|GO:0006355
Gabi3373g00056 170 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Gabi3373g00056 170 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Gabi3373g00056 170 SUPERFAMILY DNA-binding domain 19 78 IPR016177 GO:0003677
Gabi3373g00056 170 SMART rav1_2 19 84 IPR001471 GO:0003700|GO:0006355
Gabi3373g00056 170 CDD AP2 18 80 IPR001471 GO:0003700|GO:0006355
Gabi3373g00056 170 Gene3D AP2/ERF domain 18 80 IPR036955 GO:0003700|GO:0006355
Gabi3373g00056 170 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3373g00056 Gabi-Chr3373 508811 509389 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3373g00056 12 170 AP2-EREBP Transcription Factor Family AT1G22810 45.283 1.32e-39 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi3373g00056 AP2 1.8e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3373g00056 - - aprc:113869965 239.195