Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3373g00050 ATGGGGTGCATATGCTCAAAAGATTGCTCAAGCAAAGACAGAATTGGTGAATATGAGATAGAAAAAGAGTTGAACAAGTCTTCACTACAATTGGTTGCTCCTGCTGTCTCAGCTGCCCAATTAGGTGGCTGTGGCATGGATGGTTCAGTGCCCCGTTTGGCTAAGGCATCATCACAAATATTTCGGGGGTCTTTCAAAGCGCTATTAGAAGATAAAAACAGATACTTAGAAGCCACAAAAAGCCAGCATCAAAGATGTATGACAATAGGTGCTGGTGTAGGTGAAGGAAAGCCACTAATGAGTAGAATACTTAGCGTGTCACGTAGTGCAGGAGGACATGTTGATGTTGGATGGCCATCATGGTTATCTTCAGTGGCAGCAGAAGCCATCAAAGGTTGGGTGCCACGACGGGCTGACTCATTTGAAAAATTAGACCAAATTGGACAAGGGGCTTATAGCAGTGTGTATAAAGCTCGTGACCTTGAAACTGGTAAAATTGTGGCTTTGAAGAAAGTTCGCTTTTCATGTACAGATGCAGAAAGTGTCCGTTTCATGGCAAGGGAAATCTATATTTTGCGTCAACTTGATCATCCTAATGTCATGAAGCTTGAGGGTCTTGTCACATCAAGAACATCCACCAGTTTGTACCTTGTTTTTGAATACATGGAGCATGACCTTGCTGGAATAGCAGCTATACCTGGCCTAAAGTTAACTGAATCACAGATTAAATGTTATATGCAGCAAATGCTTTGTGGGCTTGAACATTGCCATGGTCGGGGTGTGCTGCACCGTGACATCAAGGGTTCAAATCTTCTTATTGACCGCAATGGAAATCTTAAGATTGGAGATTTTGGTCTTGCAACTGTTTATGAACCTGATAAAAAGCAGCCATTGACTAGCCGTGTTGTGACTCTGTGGTATAGGGCACCTGAGCTTTTGCTAGGTGCTACAGAGTATGGACCTGCCATTGACTTGTGGAGTGCTGGTTGCATTCTAGCGGAATTGCTTGTGGGGAAGCCTATCATGCCTGGAAGAACAGAGGTGGAACAAGTGCACAAGATTTTTAAGCTTTGTGGTTCCCCATCTGAAGACTATTGGCAGAGAACAAAATTTCCTCATGCAACAAGTTTTAAACCACAACACCCTTACAACCGCCAAGTCGCCGAAACATTTAAAAACTTTTCTTCTTCGGCATTGGCTCTTGTTGATGAGCTCCTTGCTATAGAACCAGAAGATCGAGGATCTGCAACTTCAGCGCTTAAGAGTGAGTTCTTCACTACAAACCCCCTACCTTGTGATCCATCAAGTTTACCAAAGTTTCCAGCAAGCAAGGAGTTTGATGCCAAGCGTCGAGAGAAGGAAGCAGTCAGGAAAAACACTGAAGCTGTAAAAGGACGTGGGCCGGTATCAGTTTTAAGGGGAGCAGGAGATACCAAAGTACTGGTAACACCAGAGTACAAAGATCGGGGAGATATATCTGTGCTGGGCAAGTCAAATTCTAGAAGAATGTCCCCTCTTAAATATCAATCCCATGAGGATGAGAAAGAGGAGGAGAGTGAGTCTCGCTACGATGGTGATCCAACCGGAGTATCTCTACATAATGGCCGTGCACATTCTATCTCAATGATGCAGGGCAATGCAGCAAGACCGTCCTCATTGAACAAGAAACCAGAATCATGTGGGAAGAAACCAGAGTTAAGGACACAAAGTTCTCATGTGAATCCGGCAGCAGTAGATTTCTCTAGCTCTTCTATAAGAAAGGAACAAGGCATGTCTGGCCAAGAACCTGGGATGGGATATATGCCAAAGAAAAATAGGATCCACTGCTCTGGACCATTGATGCCTCCTGGTGGCAACATTGATGACATGCTTAGAGAGCATGAGCGATTAATGCAAGATGTTTTCCGTAGTGTCAAGAAGAGCAATCTGAGAAACGAAAGTCACCTTTAA 1950 0.4405 MGCICSKDCSSKDRIGEYEIEKELNKSSLQLVAPAVSAAQLGGCGMDGSVPRLAKASSQIFRGSFKALLEDKNRYLEATKSQHQRCMTIGAGVGEGKPLMSRILSVSRSAGGHVDVGWPSWLSSVAAEAIKGWVPRRADSFEKLDQIGQGAYSSVYKARDLETGKIVALKKVRFSCTDAESVRFMAREIYILRQLDHPNVMKLEGLVTSRTSTSLYLVFEYMEHDLAGIAAIPGLKLTESQIKCYMQQMLCGLEHCHGRGVLHRDIKGSNLLIDRNGNLKIGDFGLATVYEPDKKQPLTSRVVTLWYRAPELLLGATEYGPAIDLWSAGCILAELLVGKPIMPGRTEVEQVHKIFKLCGSPSEDYWQRTKFPHATSFKPQHPYNRQVAETFKNFSSSALALVDELLAIEPEDRGSATSALKSEFFTTNPLPCDPSSLPKFPASKEFDAKRREKEAVRKNTEAVKGRGPVSVLRGAGDTKVLVTPEYKDRGDISVLGKSNSRRMSPLKYQSHEDEKEEESESRYDGDPTGVSLHNGRAHSISMMQGNAARPSSLNKKPESCGKKPELRTQSSHVNPAAVDFSSSSIRKEQGMSGQEPGMGYMPKKNRIHCSGPLMPPGGNIDDMLREHERLMQDVFRSVKKSNLRNESHL 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3373g00050 649 Gene3D Transferase(Phosphotransferase) domain 1 229 465 - -
Gabi3373g00050 649 PANTHER CELL DIVISION PROTEIN KINASE 139 431 - -
Gabi3373g00050 649 Pfam Protein kinase domain 141 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3373g00050 649 MobiDBLite consensus disorder prediction 506 524 - -
Gabi3373g00050 649 CDD STKc_CDK9_like 141 425 - -
Gabi3373g00050 649 SMART serkin_6 141 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3373g00050 649 MobiDBLite consensus disorder prediction 534 553 - -
Gabi3373g00050 649 ProSitePatterns Serine/Threonine protein kinases active-site signature. 261 273 IPR008271 GO:0004672|GO:0006468
Gabi3373g00050 649 SUPERFAMILY Protein kinase-like (PK-like) 134 433 IPR011009 -
Gabi3373g00050 649 FunFam probable serine/threonine-protein kinase At1g54610 128 223 - -
Gabi3373g00050 649 ProSiteProfiles Protein kinase domain profile. 141 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3373g00050 649 Gene3D Phosphorylase Kinase; domain 1 136 228 - -
Gabi3373g00050 649 MobiDBLite consensus disorder prediction 491 572 - -
Gabi3373g00050 649 FunFam probable serine/threonine-protein kinase At1g54610 224 465 - -
Gabi3373g00050 649 ProSitePatterns Protein kinases ATP-binding region signature. 147 170 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3373g00050 Gabi-Chr3373 482276 485501 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3373g00050 133 464 Core Cell Cycle Gene Families AT5G10270 52.586 1.00e-120 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gabi3373g00050 Pkinase 1.5e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3373g00050 K08819 - gmx:100791743 952.97