Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3373g00046 ATGCAGGGAAGCGCAGCAGACGGCGAAGCGTTGGATTTCGAGCCTGAGGACGATGACTTGATGGACGAGGACGGCGCTGCTGACGCCGACGCTTCTCCCCCTCACCCCAAGCTCAAGTCCGCAATCACTGCCGGCGGCGCGTCTTCTCCACTCTCCGGCCCCAAGAAAACCAAGGGACGCGGATTCCGTCAGGACACCGATGGAAACCGTAACAGCCGACTCTCCGGCTCCGATTTCGACTCTCTTACCACCGAGGGTGGCCCTGGTCCTCAAAGATCTGTTGAAGGATGGATTATTTTGGTCACGGGTGTGCATGAGGAAGCGCAAGAGGATGATTTGCAAACTGCATTTCGTGAATATGGAGAGATTAAGAACCTTCATTTGAACCTCGATCGTCGCACTGGTTATGTCAAAGGTTATGCACTGATTGAATATGAGCGTGCTGAGGAAGCTCGGAATGCAATAGAGAATTTGAATGGATCTGAGCTTCTTACGCAAACCATCAATGTTGATTGGGCTTTCAGCAGTGGACCTATTAATGAGTCAATCAGAAGAAAGAATGCTAGACCACCTCGTGAACGGCGCTCCAGGAGCCCTCGGAGGAGATATTGA 612 0.5229 MQGSAADGEALDFEPEDDDLMDEDGAADADASPPHPKLKSAITAGGASSPLSGPKKTKGRGFRQDTDGNRNSRLSGSDFDSLTTEGGPGPQRSVEGWIILVTGVHEEAQEDDLQTAFREYGEIKNLHLNLDRRTGYVKGYALIEYERAEEARNAIENLNGSELLTQTINVDWAFSSGPINESIRRKNARPPRERRSRSPRRRY 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3373g00046 203 PRINTS RNA binding motif protein 8 family signature 51 63 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Gabi3373g00046 203 PRINTS RNA binding motif protein 8 family signature 162 174 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Gabi3373g00046 203 PRINTS RNA binding motif protein 8 family signature 88 102 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Gabi3373g00046 203 PRINTS RNA binding motif protein 8 family signature 144 160 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Gabi3373g00046 203 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 175 IPR000504 GO:0003723
Gabi3373g00046 203 PANTHER RNA-BINDING PROTEIN 8A 7 202 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Gabi3373g00046 203 MobiDBLite consensus disorder prediction 189 203 - -
Gabi3373g00046 203 MobiDBLite consensus disorder prediction 10 26 - -
Gabi3373g00046 203 MobiDBLite consensus disorder prediction 68 88 - -
Gabi3373g00046 203 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 168 IPR000504 GO:0003723
Gabi3373g00046 203 SMART rrm1_1 98 171 IPR000504 GO:0003723
Gabi3373g00046 203 MobiDBLite consensus disorder prediction 181 203 - -
Gabi3373g00046 203 SUPERFAMILY RNA-binding domain, RBD 90 201 IPR035979 GO:0003676
Gabi3373g00046 203 CDD RRM_RBM8 91 178 IPR033744 GO:0003729
Gabi3373g00046 203 Gene3D - 45 188 IPR012677 -
Gabi3373g00046 203 FunFam RNA-binding protein 8A 39 188 - -
Gabi3373g00046 203 MobiDBLite consensus disorder prediction 1 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3373g00046 Gabi-Chr3373 433713 436446 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3373g00046 99 173 Eukaryotic Initiation Factors Gene Family AT3G11400 29.333 6.29e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3373g00046 K12876 - gmx:100527187 287.73