Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3373g00034 ATGGGATCTATGTTTCAAGAAGAAGGGTCATCTTCTGTAACTTCTTCACCTCTACAGTTCTTCTCTATGATGTCACTTTCACCTAGCATAGGATCTCCCTACCCATTTCTTAGAGAATTGAAATCTGAGGAAAGGGGTTTGTACTTGATCCATTTGTTGCTCACTTGTGCAAACCATGTAGCTGCTGGTAGTCTTGAAAATGCAAACATCACACTTGAGCAAATTTCCCAACTTGCTTCGCCTGATGGTGATACTATGCAGCGAATTGCTGCATACTTTACCGAAGCACTTGCTGATAGGATATTGAAAACGTGGCCTGGCCTCCACAAGGCCCTCAATTCCACCAGAATAATTATGGTTTCTGAAGAAATTCTTGTCCAGAAGCTCTTCTTTGATCTTTTCCCTTTCTTGAAGGTAGCATATATTCTGACAAATCAAGCTATTGTTGAAGCTATGGAAGGGGAGAAAATGGTACATATAATTGATCTCAATGCCTCAGAACCTGCGCAGTGGATTGCTCTCCTCCAAGTTTTGAGTGCACGTCCTGAAGGCCCTCCCCATTTGAGAATTACTGGGGTTCATCAGCAGAAAGAGATTCTGGATCAGATGGCTCATAAACTTACTGAAGAAGCAGAAAAGTTGGATATCCCATTCCAATTCAATCCTGTAGTCAGCAAGTTAGAAAATCTTGATTTTGACAAACTTCGTGTGAAAACTGGGGAGGCACTAGCAATAAGTTCTATTCTGCAATTACATTCCCTTTTGGCCTTGGATGATGAAGCCTTGCGGAGAAAATCTCCTCTTCTGTCAAAAAACTCAAATGGAATTAACCTGCAAAAAGTCCTGCTAATGAACCAAAACACATTGGGGGATTTGCTTGAAAAAGATATGGTTAATGGCTATACCCCAAGTCCTGAATCAGCCTCATCTTCACCGGGATCTTTAACTGCTTCAATGAATGCGGAGAATTTTATTAGTGCCTTATGGGGATTATCACCAAAGGTCATGGTTGTAACTGAACAAGACTCTAATCATAATGGTTCGACTCTGATGGAGAGGCTACTAGAAGCTCTACATTCTTATGCGGCATTGTTTGATTGTTTGGAATCCACTGTATCAAGAACATCATTGGAGAGATTCAAGGTGGAGAAGATGCTTTTTGGTGAGGAAATCAAGAACATTATTGCTTGTGAGGGAGCTGAAAGAAAGGAAAGACATGAAAAGCTTGATAAGTGGCTTCAGAGACTTGATTTATCTGGGTTTGGGAGCGTGCCTTTAAGCTATTATGGTATGTTGCAGGCACAGAGGTTCCTGCAGAGCTGTGGTTGTGAGGGATATAGGATGAAGGATGAAAATGGTTGTGTAGTAATTTGCTGGCAGGATAGGTCCTTGTTTTCAATAACAGCTTGGAGACCTAGGAAGTAA 1425 0.414 MGSMFQEEGSSSVTSSPLQFFSMMSLSPSIGSPYPFLRELKSEERGLYLIHLLLTCANHVAAGSLENANITLEQISQLASPDGDTMQRIAAYFTEALADRILKTWPGLHKALNSTRIIMVSEEILVQKLFFDLFPFLKVAYILTNQAIVEAMEGEKMVHIIDLNASEPAQWIALLQVLSARPEGPPHLRITGVHQQKEILDQMAHKLTEEAEKLDIPFQFNPVVSKLENLDFDKLRVKTGEALAISSILQLHSLLALDDEALRRKSPLLSKNSNGINLQKVLLMNQNTLGDLLEKDMVNGYTPSPESASSSPGSLTASMNAENFISALWGLSPKVMVVTEQDSNHNGSTLMERLLEALHSYAALFDCLESTVSRTSLERFKVEKMLFGEEIKNIIACEGAERKERHEKLDKWLQRLDLSGFGSVPLSYYGMLQAQRFLQSCGCEGYRMKDENGCVVICWQDRSLFSITAWRPRK 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3373g00034 474 ProSiteProfiles GRAS family profile. 40 471 IPR005202 -
Gabi3373g00034 474 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 45 466 IPR005202 -
Gabi3373g00034 474 Pfam GRAS domain family 49 471 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3373g00034 Gabi-Chr3373 338075 340498 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3373g00034 1 474 GRAS Transcription Factor Family AT1G50420 68.595 0.0 679
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gabi3373g00034 GRAS 2.7e-138 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3373g00034 - - cave:132164091 799.66