Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3373g00022 ATGTCATGCGGTGAAATTGATATTCAGTTTCCTTTCGGTTTGAAAGGAGCCAATAAAGGTCGTCGATGTAGCTACCCAAGATTCCAACTTTCATGCGACAAACAAAACCAGACCATTCTTAAACTCTCAGATTCAGGGGATTTGGTCGTGAAAAGCATCAATTACGAGGACCAAACCATTAAGGTAAACGACCCCGATGGTTGTCTCCCAAAACGTTTCTTAGAGAACTGGAGCCTTTCCGTGTCCCCACCATTCATGTTTGATGCCAGCGTTTATGGGTTTTATGACCTCACTTTCTTTCGTTGTCCTTACAACGTAACAAAGACATATCCAGTGCCATCAATTTCTTGCATCAGCGATAACTCTTCATCGGTGATATTTTCATTGTGGAGCAGACCTATTGACATATCACCGTGGCATGAGTGTGAGGTGATGTCATCAGCGCTTGTTCCCATTCCAAATTCAATCATGGAAACATCGCCCTTCTTCTCCCCTGATCTTAACAATGATATTGAGTTGAAGTGGAACAAGCCCACGTGCGGGGATTGTGCTGCTCGTGGCCAAGTTTGTGGCTTCAAAGGTCTTCCAAGAAGTGCCAAATATGGCTTAACTATAGGACTGGGAGTACCTGCACTCTTGGGTATAATTGGGATTTCCTGCTTTATCTGCAGTAAGTACACGCATCGCCACCAGACCGGGCCCAGCATGGAGCTTTCGAACTCGATTATTGCCGTGCCCTCGTTCATAATGGGCCTTAATGGGCCTGAAATTGAAAAACTTCCCAAGACTATTATTGGTGAGAGTGGGCGCTTACCGAAGTCCAATGAGAACACGTGCTCAATATGCCTGTGTGAATACGAGGCCAAGGAGACGTTGAGGACCATACCTGCGTGCAACCATTATTTTCATGCACACTGCATAGATGAGTGGCTCAAGATGAACGCTACATGCCCCATATGCAGGAATTCACCGGATGCGTCCACAACTGTTACCCCTTCTTATTCTTCTTTGTCTTTCTATTCGTAA 1026 0.4542 MSCGEIDIQFPFGLKGANKGRRCSYPRFQLSCDKQNQTILKLSDSGDLVVKSINYEDQTIKVNDPDGCLPKRFLENWSLSVSPPFMFDASVYGFYDLTFFRCPYNVTKTYPVPSISCISDNSSSVIFSLWSRPIDISPWHECEVMSSALVPIPNSIMETSPFFSPDLNNDIELKWNKPTCGDCAARGQVCGFKGLPRSAKYGLTIGLGVPALLGIIGISCFICSKYTHRHQTGPSMELSNSIIAVPSFIMGLNGPEIEKLPKTIIGESGRLPKSNENTCSICLCEYEAKETLRTIPACNHYFHAHCIDEWLKMNATCPICRNSPDASTTVTPSYSSLSFYS 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3373g00022 341 CDD RING-H2_EL5-like 279 321 - -
Gabi3373g00022 341 ProSiteProfiles Zinc finger RING-type profile. 279 321 IPR001841 -
Gabi3373g00022 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 326 IPR013083 -
Gabi3373g00022 341 Pfam Wall-associated receptor kinase galacturonan-binding 2 64 IPR025287 GO:0030247
Gabi3373g00022 341 Pfam Ring finger domain 277 321 IPR001841 -
Gabi3373g00022 341 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 324 IPR046948 -
Gabi3373g00022 341 SUPERFAMILY RING/U-box 274 327 - -
Gabi3373g00022 341 SMART ring_2 279 320 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3373g00022 Gabi-Chr3373 251279 252599 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3373g00022 2 324 C3H Transcription Factor Family AT2G46495 34.251 3.00e-50 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3373g00022 - - gmx:100810240 375.941